Browse Element(s) Details


OsAffx.23811.1.S1_x_at

Description gb:NM_191450.1
DB_XREF= gi:34909983
GEN=P0490D09.16
TID=OsAffx.23811.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0490D09.16 (P0490D09.16), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5673011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g56690NANA1+33041627..33043265Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g56700OsAffx.11626.1.S1_at5/111+33048293..33048628hypothetical protein
LOC_Os01g56710OsAffx.2345.1.S1_at11/111+33049553..33051157F-box domain containing protein
LOC_Os01g56710Os.47942.1.A1_at9/111+33049553..33051157F-box domain containing protein
LOC_Os01g56720OsAffx.11628.1.S1_x_at1/111+33053494..33054293hypothetical protein
LOC_Os01g56730Os.50262.1.S1_at11/111+33062208..33066679expressed protein
LOC_Os01g56730OsAffx.23811.1.S1_x_at11/111+33062208..33066679expressed protein
LOC_Os01g56740Os.11360.1.S1_at11/111+33066811..33068445F-box domain containing protein, expressed
LOC_Os01g56750Os.11360.1.S1_at1/111+33071865..33073157F-box domain containing protein
LOC_Os01g56764Os.35025.1.S1_at11/111+33074424..33084646H1flk, putative, expressed
LOC_Os01g56764Os.35025.2.S1_x_at11/111+33074424..33084646H1flk, putative, expressed
LOC_Os01g56764OsAffx.32213.1.A1_at1/111+33074424..33084646H1flk, putative, expressed
LOC_Os01g56764OsAffx.23640.2.S1_at1/111+33074424..33084646H1flk, putative, expressed
LOC_Os01g56764OsAffx.1072.1.S1_at1/111+33074424..33084646H1flk, putative, expressed
LOC_Os01g56780Os.11673.2.S1_x_at11/111+33085980..33091601Plus-3 domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23811.1.S1_x_at--149--2271Chr01:33065658..33065682 (25 bp)
AAATCTCTCCACTTTAGACCTTAGC
LOC_Os01g56730
OsAffx.23811.1.S1_x_at--849--5371Chr01:33065721..33065745 (25 bp)
GAAGAACTTAAGCATGCGCCATCCA
LOC_Os01g56730
OsAffx.23811.1.S1_x_at--746--9151Chr01:33065735..33065759 (25 bp)
TGCGCCATCCAAATGTTGTCTGTTA
LOC_Os01g56730
OsAffx.23811.1.S1_x_at--426--331Chr01:33065798..33065822 (25 bp)
ATACTCTTGCCTTAAGCTCCTATGA
LOC_Os01g56730
OsAffx.23811.1.S1_x_at--1067--3851Chr01:33065970..33065994 (25 bp)
CTGACCATTTGTTTGAGCTCCGGAA
LOC_Os01g56730
OsAffx.23811.1.S1_x_at--139--10351Chr01:33065997..33066021 (25 bp)
TTTTCGCCGTCCTATGACTATTTTT
LOC_Os01g56730
OsAffx.23811.1.S1_x_at--589--951Chr01:33066192..33066216 (25 bp)
AGGACATTCCTCAAAGTCACATTTG
LOC_Os01g56730
OsAffx.23811.1.S1_x_at--804--6231Chr01:33066222..33066246 (25 bp)
GATGGCTGAAGACCACCATTGCCAC
LOC_Os01g56730
OsAffx.23811.1.S1_x_at--320--6051Chr01:33066259..33066283 (25 bp)
GAGATCACAGGGTTTAGCTCTGCTA
LOC_Os01g56730
OsAffx.23811.1.S1_x_at--678--7231Chr01:33066327..33066351 (25 bp)
GTCGCTCGAGTGTCTTACTTTGGAC
LOC_Os01g56730
OsAffx.23811.1.S1_x_at--4--8151Chr01:33066348..33066372 (25 bp)
GGACACCCTGTATCCGTATGATTTT
LOC_Os01g56730
Target Sequence 
AAATCTCTCCACTTTAGACCTTAGCGGAAAGGCGGAACTGTTGCTTGGGGAAACATTGCAAATGAAGAACTTAAGCATGC
GCCATCCAAATGTTGTCTGTTATGCTCGTTCTGAGCTTCCATCCAGTATGCCAAATATTGATACTCTTGCCTTAAGCTCC
TATGATGAGGTGGTTAATACACCAATGCTGCCTACCAAATTCCTCTACCTCAAGCACCTGACCATTTGTTTGAGCTCCGG
AACCTTTTCGCCGTCCTATGACTATTTTTCTCTGGTTTCTTTCCTTGATGCGTCTCCTTCCTTGGAGACTTTGAACTTGG
ATGTAACAAATGATCCTATGAAGCATGAATCAATTCTAGGACATTCCTCAAAGTCACATTTGAGGCAGATGGCTGAAGAC
CACCATTGCCACCTCAAGAATGTGGAGATCACAGGGTTTAGCTCTGCTAAGAGCTTGGTTGAGCTAACTTGTTATATCCT
CAAGAACTCGGTGTCGCTCGAGTGTCTTACTTTGGACACCCTGTATCCGTATGATTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23811.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis