Browse Element(s) Details


Os.50262.1.S1_at

Description gb:AK120412.1
DB_XREF= gi:37990035
TID=Os.50262.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50262 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013092B14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013092B14, full insert sequence.
FL= gb:AK120412.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5673011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g56690NANA1+33041627..33043265Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g56700OsAffx.11626.1.S1_at5/111+33048293..33048628hypothetical protein
LOC_Os01g56710OsAffx.2345.1.S1_at11/111+33049553..33051157F-box domain containing protein
LOC_Os01g56710Os.47942.1.A1_at9/111+33049553..33051157F-box domain containing protein
LOC_Os01g56720OsAffx.11628.1.S1_x_at1/111+33053494..33054293hypothetical protein
LOC_Os01g56730Os.50262.1.S1_at11/111+33062208..33066679expressed protein
LOC_Os01g56730OsAffx.23811.1.S1_x_at11/111+33062208..33066679expressed protein
LOC_Os01g56740Os.11360.1.S1_at11/111+33066811..33068445F-box domain containing protein, expressed
LOC_Os01g56750Os.11360.1.S1_at1/111+33071865..33073157F-box domain containing protein
LOC_Os01g56764Os.35025.1.S1_at11/111+33074424..33084646H1flk, putative, expressed
LOC_Os01g56764Os.35025.2.S1_x_at11/111+33074424..33084646H1flk, putative, expressed
LOC_Os01g56764OsAffx.32213.1.A1_at1/111+33074424..33084646H1flk, putative, expressed
LOC_Os01g56764OsAffx.23640.2.S1_at1/111+33074424..33084646H1flk, putative, expressed
LOC_Os01g56764OsAffx.1072.1.S1_at1/111+33074424..33084646H1flk, putative, expressed
LOC_Os01g56780Os.11673.2.S1_x_at11/111+33085980..33091601Plus-3 domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50262.1.S1_at--15--8871Chr01:33066424..33066448 (25 bp)
TGAGGGAAGCCCGTACAGCGCTTGT
LOC_Os01g56730
Os.50262.1.S1_at--1136--3371Chr01:33066439..33066463 (25 bp)
CAGCGCTTGTGGCTATCGGAAGATA
LOC_Os01g56730
Os.50262.1.S1_at--1140--6151Chr01:33066468..33066492 (25 bp)
GAGGATAAAGTTCCCGCTAGAGTTA
LOC_Os01g56730
Os.50262.1.S1_at--450--10651Chr01:33066478..33066502 (25 bp)
TTCCCGCTAGAGTTAAGTTGACCGT
LOC_Os01g56730
Os.50262.1.S1_at--46--10491Chr01:33066490..33066514 (25 bp)
TTAAGTTGACCGTTGTGGAGCCCTG
LOC_Os01g56730
Os.50262.1.S1_at--106--5831Chr01:33066497..33066521 (25 bp)
GACCGTTGTGGAGCCCTGTAGTCAA
LOC_Os01g56730
Os.50262.1.S1_at--128--8771Chr01:33066513..33066537 (25 bp)
TGTAGTCAATGCCATAAGTTGTCAT
LOC_Os01g56730
Os.50262.1.S1_at--1067--2811Chr01:33066528..33066552 (25 bp)
AAGTTGTCATAATCACTCGCATAAA
LOC_Os01g56730
Os.50262.1.S1_at--60--2011Chr01:33066542..33066566 (25 bp)
ACTCGCATAAACGTAGGATGTTCTT
LOC_Os01g56730
Os.50262.1.S1_at--1114--6271Chr01:33066558..33066582 (25 bp)
GATGTTCTTAACTTCGGATGAGCCA
LOC_Os01g56730
Os.50262.1.S1_at--670--7991Chr01:33066573..33066597 (25 bp)
GGATGAGCCATATGTTTCTTGAATT
LOC_Os01g56730
Target Sequence 
TGAGGGAAGCCCGTACAGCGCTTGTGGCTATCGGAAGATACATCGAGGATAAAGTTCCCGCTAGAGTTAAGTTGACCGTT
GTGGAGCCCTGTAGTCAATGCCATAAGTTGTCATAATCACTCGCATAAACGTAGGATGTTCTTAACTTCGGATGAGCCAT
ATGTTTCTTGAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50262.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis