Browse Element(s) Details


OsAffx.11626.1.S1_at

Description gb:NM_191446.1
DB_XREF= gi:34909975
GEN=P0490D09.12
TID=OsAffx.11626.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0490D09.12 (P0490D09.12), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g567005/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g56660OsAffx.21591.1.S1_at11/111+33020608..33023334hypothetical protein
LOC_Os01g56670Os.17630.1.S1_s_at11/111+33025872..33036119Glycosyl hydrolase family 47 protein, expressed
LOC_Os01g56680Os.5378.1.S1_at11/111+33034766..33036132Photosystem II reaction centre W protein containing protein, expressed
LOC_Os01g56690NANA1+33041627..33043265Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g56700OsAffx.11626.1.S1_at5/111+33048293..33048628hypothetical protein
LOC_Os01g56710OsAffx.2345.1.S1_at11/111+33049553..33051157F-box domain containing protein
LOC_Os01g56710Os.47942.1.A1_at9/111+33049553..33051157F-box domain containing protein
LOC_Os01g56720OsAffx.11628.1.S1_x_at1/111+33053494..33054293hypothetical protein
LOC_Os01g56730Os.50262.1.S1_at11/111+33062208..33066679expressed protein
LOC_Os01g56730OsAffx.23811.1.S1_x_at11/111+33062208..33066679expressed protein
LOC_Os01g56740Os.11360.1.S1_at11/111+33066811..33068445F-box domain containing protein, expressed
LOC_Os01g56750Os.11360.1.S1_at1/111+33071865..33073157F-box domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11626.1.S1_at--193--7111Chr01:33045985..33046009 (25 bp)
GTCACCTGACATACGTGCAGTGGTT
NONE
OsAffx.11626.1.S1_at--1062--2131Chr01:33046021..33046045 (25 bp)
ACAGTTGCTTGTGTGTTTTCGTCGC
NONE
OsAffx.11626.1.S1_at--137--4011Chr01:33046046..33046070 (25 bp)
CGTGCTGTTCGCTACGTGTTGTACA
NONE
OsAffx.11626.1.S1_at--190--3791Chr01:33048061..33048085 (25 bp)
CTCGATAGTAGCAGGGCGCCAGGAT
NONE
OsAffx.11626.1.S1_at--679--5951Chr01:33048209..33048261 (25 bp)
GAGAATACGTTCGATCCAGCGGCGG
NONE
OsAffx.11626.1.S1_at--142--4351Chr01:33048291..33048315 (25 bp)
CCATGGACGAGCTCGATTGCGGTGA
NONE
OsAffx.11626.1.S1_at--93--31Chr01:33048306..33048330 (25 bp)
ATTGCGGTGAGCACCAACTCAACGG
LOC_Os01g56700
OsAffx.11626.1.S1_at--859--771Chr01:33048373..33048397 (25 bp)
ATGTGCTTGTACTGCGTTGGCATCA
LOC_Os01g56700
OsAffx.11626.1.S1_at--458--4971Chr01:33048392..33048416 (25 bp)
GCATCAGCTCTGAGATTGCCAGCGC
LOC_Os01g56700
OsAffx.11626.1.S1_at--1104--2671Chr01:33048495..33048519 (25 bp)
AAGCTGGCGCCGTTGAGGACGTCAC
LOC_Os01g56700
OsAffx.11626.1.S1_at--900--2771Chr01:33048570..33048594 (25 bp)
AAGAGAGCGTAGTGGATCCCTTCCT
LOC_Os01g56700
Target Sequence 
GTCACCTGACATACGTGCAGTGGTTGATCGGGAAACACAGTTGCTTGTGTGTTTTCGTCGCCGTGCTGTTCGCTACGTGT
TGTACAGGAATGAACACGACTGCTCGATAGTAGCAGGGCGCCAGGATGACGATGGGAAGCGGCAGCGGCGGGACGACAAC
GTTTGTCGCGGAGTGGTTGGTCGAGCGGGGATGCAGAGCGGCGGTGGAGAATACGTTCGATCCAGCGGCGGCCCTTCCTC
TCCCCACCGTCGCGGCGACGCCATGGACGAGCTCGATTGCGGTGAGCACCAACTCAACGGCACCACCAGTGTGGAGATCC
ACCTTGAGGATGGCCCTCGAGTATGTGCTTGTACTGCGTTGGCATCAGCTCTGAGATTGCCAGCGCTCCACCCACTGCCC
TTGCACCCTGCCCAAGTGCCAATCGAGGTTGGTGGCGTGGAAGGTGGCGATGGCGGTAAGGTTGAAGCTGGCGCCGTTGA
GGACGTCACAAAGGAAGTTAAAGGCGAAGAGGAGCACGAAGAGGTGGCAAACGGTGACAAAGAGAGCGTAGTGGATCCCT
TCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11626.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis