Browse Element(s) Details


OsAffx.2345.1.S1_at

Description tigr:9629.m05551
TID=OsAffx.2345.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=F-box domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5671011/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g56670Os.17630.1.S1_s_at11/111+33025872..33036119Glycosyl hydrolase family 47 protein, expressed
LOC_Os01g56680Os.5378.1.S1_at11/111+33034766..33036132Photosystem II reaction centre W protein containing protein, expressed
LOC_Os01g56690NANA1+33041627..33043265Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g56700OsAffx.11626.1.S1_at5/111+33048293..33048628hypothetical protein
LOC_Os01g56710OsAffx.2345.1.S1_at11/111+33049553..33051157F-box domain containing protein
LOC_Os01g56710Os.47942.1.A1_at9/111+33049553..33051157F-box domain containing protein
LOC_Os01g56720OsAffx.11628.1.S1_x_at1/111+33053494..33054293hypothetical protein
LOC_Os01g56730Os.50262.1.S1_at11/111+33062208..33066679expressed protein
LOC_Os01g56730OsAffx.23811.1.S1_x_at11/111+33062208..33066679expressed protein
LOC_Os01g56740Os.11360.1.S1_at11/111+33066811..33068445F-box domain containing protein, expressed
LOC_Os01g56750Os.11360.1.S1_at1/111+33071865..33073157F-box domain containing protein
LOC_Os01g56764Os.35025.1.S1_at11/111+33074424..33084646H1flk, putative, expressed
LOC_Os01g56764Os.35025.2.S1_x_at11/111+33074424..33084646H1flk, putative, expressed
LOC_Os01g56764OsAffx.32213.1.A1_at1/111+33074424..33084646H1flk, putative, expressed
LOC_Os01g56764OsAffx.23640.2.S1_at1/111+33074424..33084646H1flk, putative, expressed
LOC_Os01g56764OsAffx.1072.1.S1_at1/111+33074424..33084646H1flk, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2345.1.S1_at--720--411Chr01:33050630..33050654 (25 bp)
ATCATTGTGGCCAAACCGGAGTTCC
LOC_Os01g56710
OsAffx.2345.1.S1_at--247--8031Chr01:33050647..33050671 (25 bp)
GGAGTTCCACTATTGGTGTCCGGTC
LOC_Os01g56710
OsAffx.2345.1.S1_at--645--3931Chr01:33050673..33050697 (25 bp)
CGGCTATGCCTCAAGTCGACTGGGA
LOC_Os01g56710
OsAffx.2345.1.S1_at--729--2851Chr01:33050685..33050709 (25 bp)
AAGTCGACTGGGAGTTTCGCTGCTT
LOC_Os01g56710
OsAffx.2345.1.S1_at--616--5491Chr01:33050716..33050740 (25 bp)
GAACAGGCGCGGCTACAACCAGCAG
LOC_Os01g56710
OsAffx.2345.1.S1_at--918--9731Chr01:33050745..33050769 (25 bp)
TCAAGGCGCGCTACCTAGTGAAGTC
LOC_Os01g56710
OsAffx.2345.1.S1_at--502--2891Chr01:33050834..33050858 (25 bp)
AAGGTGTTCCGGATGGTGCCAAGCC
LOC_Os01g56710
OsAffx.2345.1.S1_at--431--3771Chr01:33050865..33050889 (25 bp)
CTCGGTGTCGGCAGTACATTTGGCA
LOC_Os01g56710
OsAffx.2345.1.S1_at--1149--9871Chr01:33050879..33050903 (25 bp)
TACATTTGGCAGAGGGTGCCCTCAC
LOC_Os01g56710
OsAffx.2345.1.S1_at--715--6291Chr01:33050999..33051023 (25 bp)
GATGATGGGTTCATCCAGGACCCGG
LOC_Os01g56710
OsAffx.2345.1.S1_at--949--5571Chr01:33051064..33051088 (25 bp)
GAAATGGACGGAATCACCTGGCCCC
LOC_Os01g56710
Target Sequence 
ATCATTGTGGCCAAACCGGAGTTCCACTATTGGTGTCCGGTCCCGGCTATGCCTCAAGTCGACTGGGAGTTTCGCTGCTT
CCCATCGAACAGGCGCGGCTACAACCAGCAGCACGTCAAGGCGCGCTACCTAGTGAAGTCCCGCGAAGACCTGCTCATGG
TCGTGAGGTGCTCCCCTCATCCTGGACAGCCGACGTCGGCGTTCAAGGTGTTCCGGATGGTGCCAAGCCAGCGGGCTCGG
TGTCGGCAGTACATTTGGCAGAGGGTGCCCTCACTGGGTGGCCGGATGCTGTTCGTCGGGCGTGGCTGCTCTAGATCCTA
CGAGGCGGATCACTACCCCGCCGGCATCGCGGGCGGCATCTACTTCTTCGATGATGGGTTCATCCAGGACCCGGTGATGC
TGCAGCAACCGCAGTACAGCTGCAGCGACTGCGGGAAATGGACGGAATCACCTGGCCCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2345.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis