Browse Element(s) Details


Os.51427.1.S1_at

Description gb:AK062771.1
DB_XREF= gi:32972789
TID=Os.51427.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51427 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-107-A03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-107-A03, full insert sequence.
FL= gb:AK062771.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5598011/11expressed protein
LOC_Os08g361001/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g55950OsAffx.4187.1.S1_x_at11/114+33106151..33106677expressed protein
LOC_Os04g55950OsAffx.4187.1.S1_at11/114+33106151..33106677expressed protein
LOC_Os04g55960Os.15108.1.S1_at11/114+33110785..33116798NADPH-cytochrome P450 reductase, putative, expressed
LOC_Os04g55970Os.9597.1.S1_at11/114+33122912..33127493AP2 domain containing protein, expressed
LOC_Os04g55970Os.50864.1.S1_x_at11/114+33122912..33127493AP2 domain containing protein, expressed
LOC_Os04g55980OsAffx.14430.1.S1_s_at11/114+33128815..33129441expressed protein
LOC_Os04g55980Os.51427.1.S1_at11/114+33128815..33129441expressed protein
LOC_Os04g55990OsAffx.14431.1.S1_x_at11/114+33130600..33131006hypothetical protein
LOC_Os04g56000OsAffx.14430.1.S1_s_at11/114+33133083..33133373hypothetical protein
LOC_Os04g56010OsAffx.14430.1.S1_s_at11/114+33141552..33141881hypothetical protein
LOC_Os04g56020Os.40855.2.S1_x_at10/114+33145067..33147112hypothetical protein
LOC_Os04g56020Os.40855.4.S1_x_at4/114+33145067..33147112hypothetical protein
LOC_Os04g56020Os.40855.4.S1_at1/114+33145067..33147112hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51427.1.S1_at--750--7591Chr04:33129381..33129405 (25 bp)
GGGCAGCTCGATCTTGATATATATA
LOC_Os04g55980
Os.51427.1.S1_at--443--7571Chr04:33129049..33129073 (25 bp)
GGGCGTGTTGTGGAAACGATATTTC
LOC_Os04g55980
Os.51427.1.S1_at--902--10091Chr04:33129023..33129047 (25 bp)
TATGGAATTTCATGCCCTCTGATCT
LOC_Os04g55980
Os.51427.1.S1_at--537--4291Chr04:33129008..33129032 (25 bp)
CCTCTGATCTACACACCAGTTTGAT
LOC_Os04g55980
Os.51427.1.S1_at--435--9532Chr04:33141462..33141486 (25 bp)
TCTACACACCAGTTTGATTTTGCTT
NONE
Os.51427.1.S1_at--906--10712Chr04:33141443..33141467 (25 bp)
TTGCTTTGCAGTGTTTTTCATTTAC
NONE
Os.51427.1.S1_at--765--10531Chr04:33128966..33128990 (25 bp)
TTCATTTACATCAGTCGTGGAATAA
LOC_Os04g55980
Os.51427.1.S1_at--702--31Chr04:33128928..33128952 (25 bp)
ATTGGTAGTTTTGCTTATGTGTCAC
LOC_Os04g55980
Os.51427.1.S1_at--1032--7431Chr04:33128910..33128934 (25 bp)
GTGTCACTATATGTAAACATCCTCT
LOC_Os04g55980
Os.51427.1.S1_at--1010--5131Chr04:33128863..33128887 (25 bp)
GCAAAAACTACCTATACTTTCTTAT
LOC_Os04g55980
Os.51427.1.S1_at--940--10174Chr12:24170663..24170774 (25 bp)
TATACATATACTACTCCCTTCGTTT
NONE
Target Sequence 
GGGCAGCTCGATCTTGATATATATATATGGTCAGGCTCGCCGTGGACGCAGGCTTCGCCGCCGCCGGCGGCTCCATGCCC
GACGTGAGCAGGAGTGTTGTCGGCATAGCTCTGGTCTTCGTGGCGGCCGTAGCGATCGTGGCGTTCGTCGTGTTTAACTG
CGCCGATGGCAAGGGCAGCTCCGGTGGACGGAAGCGGCCCAGCTATGGAGGAGGTGGCGGGTGTGGAGGCGGTGGAGGTG
GCTGTGGCGGCGGCGGCGGGTGTGGCGGCGGCGGAGGTGGCTGTGGCGGCGGCGGAGGTGGCTGTTAATAAAGGAACAGA
GCATGGAGGAGAGGGCGTGTTGTGGAAACGATATTTCCTATGGAATTTCATGCCCTCTGATCTACACACCAGTTTGATTT
TGCTTTGCAGTGTTTTTCATTTACATCAGTCGTGGAATAAGAATAATAAACACATTGGTAGTTTTGCTTATGTGTCACTA
TATGTAAACATCCTCTTACATGTTTATGTATTATATTAGCAAAAACTACCTATACTTTCTTATGGGTAAAATGTACTTTA
TTATACATATACTACTCCCTTCGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51427.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis