Browse Element(s) Details


Os.15108.1.S1_at

Description gb:CB670503
DB_XREF= gi:29674228
DB_XREF=OSJNEe03J17.r
CLONE=OSJNEe03J17
TID=Os.15108.1
CNT=20
FEA=EST
TIER=ConsEnd
STK=5
UG=Os.15108 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_194183.1 (A.thaliana) NADPH-ferrihemoprotein reductase ATR1 (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5596011/11NADPH-cytochrome P450 reductase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g55920Os.12830.1.S1_at11/114+33087397..33091165ZIM motif family protein, expressed
LOC_Os04g55930Os.8192.1.S1_at11/114+33091947..33093985Uncharacterised protein family containing protein, expressed
LOC_Os04g55930Os.57383.1.S1_at11/114+33091947..33093985Uncharacterised protein family containing protein, expressed
LOC_Os04g55930Os.38851.1.A1_s_at11/114+33091947..33093985Uncharacterised protein family containing protein, expressed
LOC_Os04g55940Os.18175.1.S1_at11/114+33095564..33099970Vacuolar cation/proton exchanger 3, putative, expressed
LOC_Os04g55950OsAffx.4187.1.S1_x_at11/114+33106151..33106677expressed protein
LOC_Os04g55950OsAffx.4187.1.S1_at11/114+33106151..33106677expressed protein
LOC_Os04g55960Os.15108.1.S1_at11/114+33110785..33116798NADPH-cytochrome P450 reductase, putative, expressed
LOC_Os04g55970Os.9597.1.S1_at11/114+33122912..33127493AP2 domain containing protein, expressed
LOC_Os04g55970Os.50864.1.S1_x_at11/114+33122912..33127493AP2 domain containing protein, expressed
LOC_Os04g55980OsAffx.14430.1.S1_s_at11/114+33128815..33129441expressed protein
LOC_Os04g55980Os.51427.1.S1_at11/114+33128815..33129441expressed protein
LOC_Os04g55990OsAffx.14431.1.S1_x_at11/114+33130600..33131006hypothetical protein
LOC_Os04g56000OsAffx.14430.1.S1_s_at11/114+33133083..33133373hypothetical protein
LOC_Os04g56010OsAffx.14430.1.S1_s_at11/114+33141552..33141881hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0009698biological_processphenylpropanoid metabolism
GO:0005783cellular_componentendoplasmic reticulum
GO:0009507cellular_componentchloroplast
GO:0003958molecular_functionNADPH-hemoprotein reductase activity
GO:0016491molecular_functionoxidoreductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15108.1.S1_at--1148--8511Chr04:33116105..33116129 (25 bp)
TGGAACATCGTCTCACAAGGTGGTT
LOC_Os04g55960
Os.15108.1.S1_at--636--5991Chr04:33116166..33116190 (25 bp)
GAGACGTACACAGAGCTCTTCATAC
LOC_Os04g55960
Os.15108.1.S1_at--284--3431Chr04:33116176..33116200 (25 bp)
CAGAGCTCTTCATACAATTGTTCAA
LOC_Os04g55960
Os.15108.1.S1_at--435--2771Chr04:33116358..33116382 (25 bp)
AAGAGCCTACAGATGGACGGCAGGT
LOC_Os04g55960
Os.15108.1.S1_at--741--811Chr04:33116396..33116420 (25 bp)
ATGGTGACACCATCAGAATTATCAG
LOC_Os04g55960
Os.15108.1.S1_at--1162--3091Chr04:33116422..33116446 (25 bp)
AATAGCTCGCTCTAGCTTTGTAGAA
LOC_Os04g55960
Os.15108.1.S1_at--1152--2771Chr04:33116458..33116482 (25 bp)
AAGAGTCGGATTTGCCTGTAAGGCC
LOC_Os04g55960
Os.15108.1.S1_at--705--9771Chr04:33116476..33116500 (25 bp)
TAAGGCCATGGTGCATGCCAATCCA
LOC_Os04g55960
Os.15108.1.S1_at--413--2851Chr04:33116553..33116577 (25 bp)
AAGTCGGTGTAATTCTTTGACATCT
LOC_Os04g55960
Os.15108.1.S1_at--711--9831Chr04:33116645..33116669 (25 bp)
TAGAACCTGAAAGTTGGCCCTGTCC
LOC_Os04g55960
Os.15108.1.S1_at--447--4531Chr04:33116661..33116685 (25 bp)
GCCCTGTCCCTTCAGTTTGTAGTAA
LOC_Os04g55960
Target Sequence 
TGGAACATCGTCTCACAAGGTGGTTACATATATGTGTGCGGTGATNCCAAGGGTATGGCAAGAGACGTACACAGAGCTCT
TCATACAATTGTTCAAGAGCAGGGATCTTTGGATAGCTCCNAAACCGAGAGCTATGTAAAGAGCCTACAGATGGACGGCA
GGTACCTCCGTGACGTATGGTGACACCATCAGAATTATCAGAAATAGCTCGCTCTAGCTTTGTAGAAGTGAAGGTGTCAA
GAGTCGGATTTGCCTGTAAGGCCATGGTGCATGCCAATCCANATCGTGAGTTTTTCAGAACGAAGCGTGCCGTTGCTTAG
AAAATTGGAGTTAAAAGTCGGTGTAATTCTTTGACATCTAACATGGTTCCGATATTTATTATTATTATATGGATGATTGA
AAGAATAAGTACCTGTTGTAGATTTGTAGAACCTGAAAGTTGGCCCTGTCCCTTCAGTTTGTAGTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15108.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis