Browse Element(s) Details


Os.18175.1.S1_at

Description gb:AK073795.1
DB_XREF= gi:32983818
TID=Os.18175.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18175 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033068D06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033068D06, full insert sequence.
FL= gb:AK073795.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5594011/11Vacuolar cation/proton exchanger 3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g55910Os.56089.1.S1_at1/114+33070057..33070671transposon protein, putative, unclassified
LOC_Os04g55920Os.12830.1.S1_at11/114+33087397..33091165ZIM motif family protein, expressed
LOC_Os04g55930Os.8192.1.S1_at11/114+33091947..33093985Uncharacterised protein family containing protein, expressed
LOC_Os04g55930Os.57383.1.S1_at11/114+33091947..33093985Uncharacterised protein family containing protein, expressed
LOC_Os04g55930Os.38851.1.A1_s_at11/114+33091947..33093985Uncharacterised protein family containing protein, expressed
LOC_Os04g55940Os.18175.1.S1_at11/114+33095564..33099970Vacuolar cation/proton exchanger 3, putative, expressed
LOC_Os04g55950OsAffx.4187.1.S1_x_at11/114+33106151..33106677expressed protein
LOC_Os04g55950OsAffx.4187.1.S1_at11/114+33106151..33106677expressed protein
LOC_Os04g55960Os.15108.1.S1_at11/114+33110785..33116798NADPH-cytochrome P450 reductase, putative, expressed
LOC_Os04g55970Os.9597.1.S1_at11/114+33122912..33127493AP2 domain containing protein, expressed
LOC_Os04g55970Os.50864.1.S1_x_at11/114+33122912..33127493AP2 domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006793biological_processphosphorus metabolism
GO:0006812biological_processcation transport
GO:0006816biological_processcalcium ion transport
GO:0006874biological_processcalcium ion homeostasis
GO:0006882biological_processzinc ion homeostasis
GO:0030001biological_processmetal ion transport
GO:0030026biological_processmanganese ion homeostasis
GO:0051592biological_processresponse to calcium ion
GO:0005774cellular_componentvacuolar membrane
GO:0009705cellular_componentvacuolar membrane (sensu Magnoliophyta)
GO:0012505cellular_componentendomembrane system
GO:0015368molecular_functioncalcium:cation antiporter activity
GO:0015369molecular_functioncalcium:hydrogen antiporter activity
GO:0015491molecular_functioncation:cation antiporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18175.1.S1_at--1155--9591Chr04:33098690..33098714 (25 bp)
TCATAACAGTACTAGTCGTGGCATT
LOC_Os04g55940
Os.18175.1.S1_at--116--8011Chr04:33099232..33099256 (25 bp)
GGATGGTGTTGCGAACTACTTGAAA
LOC_Os04g55940
Os.18175.1.S1_at--127--951Chr04:33099256..33099280 (25 bp)
AGGACTTATGCTGATCTTGTGTTAT
LOC_Os04g55940
Os.18175.1.S1_at--549--6791Chr04:33099276..33099300 (25 bp)
GTTATCTAATAGTTGCCGCCAGTTT
LOC_Os04g55940
Os.18175.1.S1_at--571--1191Chr04:33099296..33099320 (25 bp)
AGTTTCTTCGTTCACGTTGATCCAC
LOC_Os04g55940
Os.18175.1.S1_at--808--4031Chr04:33099310..33099616 (25 bp)
CGTTGATCCACAATCCAGCGATGAT
LOC_Os04g55940
Os.18175.1.S1_at--94--1651Chr04:33099609..33099632 (24 bp)
AGCGATGATTGATGCCACGGACACT
LOC_Os04g55940
Os.18175.1.S1_at--656--3151Chr04:33099675..33099699 (25 bp)
AATTCTGGTGAGTTGCTCCTCCGTA
LOC_Os04g55940
Os.18175.1.S1_at--176--7891Chr04:33099766..33099790 (25 bp)
GGTTAGTTTGTCCATGATCTGCAGC
LOC_Os04g55940
Os.18175.1.S1_at--72--8711Chr04:33099894..33099918 (25 bp)
TGTCGCCCATGTAAAAAGTCTCCTT
LOC_Os04g55940
Os.18175.1.S1_at--673--3131Chr04:33099937..33099961 (25 bp)
AATTCAGTTAATGTGGCCCTGGCCC
LOC_Os04g55940
Target Sequence 
TCATAACAGTACTAGTCGTGGCATTTATGCTACAGGATGGTGTTGCGAACTACTTGAAAGGACTTATGCTGATCTTGTGT
TATCTAATAGTTGCCGCCAGTTTCTTCGTTCACGTTGATCCACAATCCAGCGATGATTGATGCCACGGACACTGTAATTA
TTGTACCAAATACCCTTGAAGCCNTTTACTAATCTTAATTCTGGTGAGTTGCTCCTCCGTAGCAGAGCTCAGCCTGCTGG
CAGGAGCTGGCAGAATGTTGNACACGGCCGGGAAAATCACGTGGTGTCGGTTAGTTTGTCCATGATCTGCAGCAGCAATT
ATTGCACGTTGCAATAGTCAAAAGATCTGAAGGGCATCTAGGAGGAGGGGTGGTTGTAATGTATACAGATTACAGAAACA
AGGAAATGCAATGCAATGTCGCCCATGTAAAAAGTCTCCTTGCATAGTTGCATTCAATTAATTCAGTTAATGTGGCCCTG
GCCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18175.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis