Browse Element(s) Details


OsAffx.4187.1.S1_x_at

Description tigr:9632.m05448
TID=OsAffx.4187.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5595011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g55920Os.12830.1.S1_at11/114+33087397..33091165ZIM motif family protein, expressed
LOC_Os04g55930Os.8192.1.S1_at11/114+33091947..33093985Uncharacterised protein family containing protein, expressed
LOC_Os04g55930Os.57383.1.S1_at11/114+33091947..33093985Uncharacterised protein family containing protein, expressed
LOC_Os04g55930Os.38851.1.A1_s_at11/114+33091947..33093985Uncharacterised protein family containing protein, expressed
LOC_Os04g55940Os.18175.1.S1_at11/114+33095564..33099970Vacuolar cation/proton exchanger 3, putative, expressed
LOC_Os04g55950OsAffx.4187.1.S1_x_at11/114+33106151..33106677expressed protein
LOC_Os04g55950OsAffx.4187.1.S1_at11/114+33106151..33106677expressed protein
LOC_Os04g55960Os.15108.1.S1_at11/114+33110785..33116798NADPH-cytochrome P450 reductase, putative, expressed
LOC_Os04g55970Os.9597.1.S1_at11/114+33122912..33127493AP2 domain containing protein, expressed
LOC_Os04g55970Os.50864.1.S1_x_at11/114+33122912..33127493AP2 domain containing protein, expressed
LOC_Os04g55980OsAffx.14430.1.S1_s_at11/114+33128815..33129441expressed protein
LOC_Os04g55980Os.51427.1.S1_at11/114+33128815..33129441expressed protein
LOC_Os04g55990OsAffx.14431.1.S1_x_at11/114+33130600..33131006hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009733biological_processresponse to auxin stimulus
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4187.1.S1_x_at--367--5911Chr04:33106203..33106227 (25 bp)
GAGCTCTTCGATCAATCGCGCCGGC
LOC_Os04g55950
OsAffx.4187.1.S1_x_at--907--8411Chr04:33106225..33106249 (25 bp)
GGCCGCCATCGTCCCATGATAAGCG
LOC_Os04g55950
OsAffx.4187.1.S1_x_at--216--511Chr04:33106232..33106256 (25 bp)
ATCGTCCCATGATAAGCGGCGCCGG
LOC_Os04g55950
OsAffx.4187.1.S1_x_at--456--1531Chr04:33106274..33106298 (25 bp)
AGCAGGACACGAAGCGGCGGCTACC
LOC_Os04g55950
OsAffx.4187.1.S1_x_at--489--4231Chr04:33106303..33106327 (25 bp)
CCGACGACGTCCGAGCAGGAGAGGC
LOC_Os04g55950
OsAffx.4187.1.S1_x_at--266--1451Chr04:33106331..33106355 (25 bp)
AGAAGCAGCACCGCGGGAAGATGCT
LOC_Os04g55950
OsAffx.4187.1.S1_x_at--90--28143Chr12:10487979..10487998 (20 bp)
AAGATGCTGAGGCTGTCGGTGCAGC
NONE
OsAffx.4187.1.S1_x_at--663--9371Chr04:33106586..33106610 (25 bp)
TCGACCTGTCCAATGCCGTTCCAGG
LOC_Os04g55950
OsAffx.4187.1.S1_x_at--887--3011Chr04:33106597..33106621 (25 bp)
AATGCCGTTCCAGGGCACGTCGTCG
LOC_Os04g55950
OsAffx.4187.1.S1_x_at--133--7211Chr04:33106615..33106639 (25 bp)
GTCGTCGCGTACGAGGACATCGAGA
LOC_Os04g55950
OsAffx.4187.1.S1_x_at--579--4011Chr04:33106622..33106646 (25 bp)
CGTACGAGGACATCGAGAACGACCT
LOC_Os04g55950
Target Sequence 
GAGCTCTTCGATCAATCGCGCCGGCCGCCATCGTCCCATGATAAGCGGCGCCGGCGGTGAGCAGCAGCAGCAGCAGGACA
CGAAGCGGCGGCTACCGGCGCCGACGACGTCCGAGCAGGAGAGGCGGCAGAAGCAGCACCGCGGGAAGATGCTGAGGCTG
TCGGTGCAGCAGGGCGACGACGTGACCGCGGGCGTGGTGCCGCCGGTCACCGTCGTCCTGGACGGCCGCTCCATCTGCCA
CCGCGTCCACCTCAGCAAGCACACCGGCTACCGCAGCCTCGCCGCCGCGCTCCGCCGCATGTTCGTCGACGCGGACGACG
ACGTCGGCGCCGCCGACGAGGCAGCTGGCAGGAGCAGCTGCAGCGACGCCGACCGTGGCGGCCTCGACCTGTCCAATGCC
GTTCCAGGGCACGTCGTCGCGTACGAGGACATCGAGAACGACCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4187.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis