Browse Element(s) Details


OsAffx.14430.1.S1_s_at

Description tigr:9632.m05454
TID=OsAffx.14430.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5601011/11hypothetical protein
LOC_Os04g5600011/11hypothetical protein
LOC_Os04g5598011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g55960Os.15108.1.S1_at11/114+33110785..33116798NADPH-cytochrome P450 reductase, putative, expressed
LOC_Os04g55970Os.9597.1.S1_at11/114+33122912..33127493AP2 domain containing protein, expressed
LOC_Os04g55970Os.50864.1.S1_x_at11/114+33122912..33127493AP2 domain containing protein, expressed
LOC_Os04g55980OsAffx.14430.1.S1_s_at11/114+33128815..33129441expressed protein
LOC_Os04g55980Os.51427.1.S1_at11/114+33128815..33129441expressed protein
LOC_Os04g55990OsAffx.14431.1.S1_x_at11/114+33130600..33131006hypothetical protein
LOC_Os04g56000OsAffx.14430.1.S1_s_at11/114+33133083..33133373hypothetical protein
LOC_Os04g56010OsAffx.14430.1.S1_s_at11/114+33141552..33141881hypothetical protein
LOC_Os04g56020Os.40855.2.S1_x_at10/114+33145067..33147112hypothetical protein
LOC_Os04g56020Os.40855.4.S1_x_at4/114+33145067..33147112hypothetical protein
LOC_Os04g56020Os.40855.4.S1_at1/114+33145067..33147112hypothetical protein
LOC_Os04g56030Os.55343.1.S1_at11/114+33155284..33156145expressed protein
LOC_Os04g56040OsAffx.26624.1.S1_at11/114+33158271..33159338Glycine rich protein family protein, expressed
LOC_Os04g56050OsAffx.4189.1.S1_at11/114+33159721..33161165hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14430.1.S1_s_at--752--4233Chr04:33141739..33141763 (25 bp)
CCGTAGCGATCGTGGCGTTCGTCGT
LOC_Os04g56010
OsAffx.14430.1.S1_s_at--782--1613Chr04:33141735..33141759 (25 bp)
AGCGATCGTGGCGTTCGTCGTGTTT
LOC_Os04g56010
OsAffx.14430.1.S1_s_at--545--4053Chr04:33141733..33141757 (25 bp)
CGATCGTGGCGTTCGTCGTGTTTAA
LOC_Os04g56010
OsAffx.14430.1.S1_s_at--1080--6393Chr04:33141732..33141756 (25 bp)
GATCGTGGCGTTCGTCGTGTTTAAC
LOC_Os04g56010
OsAffx.14430.1.S1_s_at--48--513Chr04:33141731..33141755 (25 bp)
ATCGTGGCGTTCGTCGTGTTTAACT
LOC_Os04g56010
OsAffx.14430.1.S1_s_at--410--3993Chr04:33141729..33141753 (25 bp)
CGTGGCGTTCGTCGTGTTTAACTGC
LOC_Os04g56010
OsAffx.14430.1.S1_s_at--59--8473Chr04:33141727..33141751 (25 bp)
TGGCGTTCGTCGTGTTTAACTGCGC
LOC_Os04g56010
OsAffx.14430.1.S1_s_at--1040--4633Chr04:33141725..33141749 (25 bp)
GCGTTCGTCGTGTTTAACTGCGCCG
LOC_Os04g56010
OsAffx.14430.1.S1_s_at--365--6713Chr04:33141723..33141747 (25 bp)
GTTCGTCGTGTTTAACTGCGCCGAT
LOC_Os04g56010
OsAffx.14430.1.S1_s_at--255--10633Chr04:33141722..33141746 (25 bp)
TTCGTCGTGTTTAACTGCGCCGATG
LOC_Os04g56010
OsAffx.14430.1.S1_s_at--968--4013Chr04:33141720..33141744 (25 bp)
CGTCGTGTTTAACTGCGCCGATGGC
LOC_Os04g56010
Target Sequence 
CCGTAGCGATCGTGGCGTTCGTCGTGTTTAACTGCGCCGATGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14430.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis