Browse Element(s) Details


Os.8027.1.S1_at

Description gb:AK059195.1
DB_XREF= gi:32969213
TID=Os.8027.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.8027 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033099D06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-024-A01, full insert sequence.
FL= gb:AK102612.1 gb:AK059195.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g361509/11Aha1 domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g36110Os.50773.1.S1_at11/118+22621961..22623196expressed protein
LOC_Os08g36120OsAffx.20484.2.S1_at11/118+22628284..22629568retrotransposon protein, putative, unclassified
LOC_Os08g36120OsAffx.20484.1.S1_x_at2/118+22628284..22629568retrotransposon protein, putative, unclassified
LOC_Os08g36130OsAffx.447.1.S1_at1/118+22630037..22634586retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g36140Os.21784.1.S1_at11/118+22640134..22642316expressed protein
LOC_Os08g36150OsAffx.29551.1.S1_at11/118+22644276..22648424Aha1 domain-containing protein, putative, expressed
LOC_Os08g36150Os.8027.1.S1_at9/118+22644276..22648424Aha1 domain-containing protein, putative, expressed
LOC_Os08g36160OsAffx.22947.5.S1_x_at3/118+22650615..22656123retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g36160OsAffx.23640.2.S1_at1/118+22650615..22656123retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8027.1.S1_at--1096--5071NONE
GCACTCGACGGTTAGGTTGGTATTT
NONE
Os.8027.1.S1_at--960--4451Chr08:22644735..22644759 (25 bp)
GCCTGAGTCGGGAGTTACAGTCATA
LOC_Os08g36150
Os.8027.1.S1_at--353--5971Chr08:22644537..22644561 (25 bp)
GAGAACTCATCTTCCAGAGGATACG
LOC_Os08g36150
Os.8027.1.S1_at--666--2711Chr08:22644488..22644512 (25 bp)
AAGCAGTACTTTGACTCTTGAGCTG
LOC_Os08g36150
Os.8027.1.S1_at--800--5891Chr08:22644469..22644493 (25 bp)
GAGCTGGATTTCTGCTTTTCAGGAA
LOC_Os08g36150
Os.8027.1.S1_at--675--8191Chr08:22644448..22644472 (25 bp)
GGAAGTCGAGCGTTACCATGTCACA
LOC_Os08g36150
Os.8027.1.S1_at--1122--6771Chr08:22644437..22644461 (25 bp)
GTTACCATGTCACAGTTATCCCTGT
LOC_Os08g36150
Os.8027.1.S1_at--942--3871Chr08:22644416..22644440 (25 bp)
CTGTCTTTGCTGTCGCAGTTTATTC
LOC_Os08g36150
Os.8027.1.S1_at--90--2511Chr08:22644348..22644372 (25 bp)
AACATCTGTTATTCATCACGCTGGA
LOC_Os08g36150
Os.8027.1.S1_at--389--5271Chr08:22644325..22644349 (25 bp)
GAATGCGTCTGCAATGTTTGCCAAG
LOC_Os08g36150
Os.8027.1.S1_at--1059--10851NONE
TTGGTTGACTCCTTGATTGTTCTGC
NONE
Target Sequence 
GCACTCGACGGTTAGGTTGGTATTTGATGAGCCTGAGTCGGGAGTTACAGTCATAAGCCTCAAACAAACTGATGTGCCAG
AGGAAGACAGATATGGAAATTCAACTGTGGTGGAGAACACGGAGCGAGGCTGGAGAGAACTCATCTTCCAGAGGATACGC
GGAGTGTTTGGTTTTGGGATCTAAAGCAGTACTTTGACTCTTGAGCTGGATTTCTGCTTTTCAGGAAGTCGAGCGTTACC
ATGTCACAGTTATCCCTGTCTTTGCTGTCGCAGTTTATTCGATGTTAGACAGAAACTTTGCATATTACGGGGAAGTCGGA
AAAAACATCTGTTATTCATCACGCTGGAATGCGTCTGCAATGTTTGCCAAGTGTTAATCTGCAACTGATGGTTGAGTAAC
CTTGTGTTGTGTTGGTTGACTCCTTGATTGTTCTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8027.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis