Browse Element(s) Details


OsAffx.20484.2.S1_at

Description tigr:9636.m03634
TID=OsAffx.20484.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3612011/11retrotransposon protein, putative, unclassified
LOC_Os05g195101/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g216801/11hypothetical protein
LOC_Os01g606301/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g36080NANA8+22601950..22605279transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g36090NANA8+22612739..22613539hypothetical protein
LOC_Os08g36100OsAffx.29550.1.S1_at11/118+22614522..22617974hypothetical protein
LOC_Os08g36100Os.51427.1.S1_at1/118+22614522..22617974hypothetical protein
LOC_Os08g36110Os.50773.1.S1_at11/118+22621961..22623196expressed protein
LOC_Os08g36120OsAffx.20484.2.S1_at11/118+22628284..22629568retrotransposon protein, putative, unclassified
LOC_Os08g36120OsAffx.20484.1.S1_x_at2/118+22628284..22629568retrotransposon protein, putative, unclassified
LOC_Os08g36130OsAffx.447.1.S1_at1/118+22630037..22634586retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g36140Os.21784.1.S1_at11/118+22640134..22642316expressed protein
LOC_Os08g36150OsAffx.29551.1.S1_at11/118+22644276..22648424Aha1 domain-containing protein, putative, expressed
LOC_Os08g36150Os.8027.1.S1_at9/118+22644276..22648424Aha1 domain-containing protein, putative, expressed
LOC_Os08g36160OsAffx.22947.5.S1_x_at3/118+22650615..22656123retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g36160OsAffx.23640.2.S1_at1/118+22650615..22656123retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20484.2.S1_at--1154--4391Chr08:22628865..22629082 (25 bp)
GCCACCACTGAGAAAAACCGGTCAT
LOC_Os08g36120
OsAffx.20484.2.S1_at--440--5532Chr10:10088607..10088631 (25 bp)
GAAAAACCGGTCATAGTACTAATCA
NONE
OsAffx.20484.2.S1_at--548--7134Chr10:10088616..10088640 (25 bp)
GTCATAGTACTAATCAATCCCTCAA
NONE
OsAffx.20484.2.S1_at--772--9753Chr10:10088626..10088650 (25 bp)
TAATCAATCCCTCAAAACAAGCGAT
NONE
OsAffx.20484.2.S1_at--103--4633Chr08:22629108..22629132 (25 bp)
GCGATTTAGAGTGGAACTACGAACT
LOC_Os08g36120
OsAffx.20484.2.S1_at--130--9832Chr10:10088669..10088693 (25 bp)
TAAAACTACCATTCATCAATCACCC
NONE
OsAffx.20484.2.S1_at--895--9733Chr10:10088684..10088708 (25 bp)
TCAATCACCCAGACCGAAATCAGAG
NONE
OsAffx.20484.2.S1_at--400--4471Chr08:22629327..22629351 (25 bp)
GCGCTGGTTGTAACGTCCCGCCTTT
LOC_Os08g36120
OsAffx.20484.2.S1_at--563--876Chr08:22629355..22629379 (25 bp)
AGGCCGAGCCCGCTTACATCTGGCA
LOC_Os08g36120
OsAffx.20484.2.S1_at--785--32779Chr12:11746523..11746546 (24 bp)
CAACACAAGTCTTTTCTGCACACTT
NONE
OsAffx.20484.2.S1_at--976--7332Chr08:22629450..22629474 (25 bp)
GTGCACCCAGGAAGAATTTTCCGAT
LOC_Os08g36120
Target Sequence 
GCCACCACTGAGAAAAACCGGTCATAGTACTAATCAATCCCTCAAAACAAGCGATTTAGAGTGGAACTACGAACTAAAAC
TACCATTCATCAATCACCCAGACCGAAATCAGAGAAAGGGGGAAAGGTGGGACCTGGACGGGGAGGGCGTCCATGTCAGT
GCGGAGCGCGACGATGGGGGGAAGGCTGGAGCCGACGTTGGCGATGACGCCGATGCCGGCGACCGCGCGGGCGGTGAGGC
CGAGCCGCTCCAGCTCGTGGCGGACGAGGGCGCTGGTTGTAACGTCCCGCCTTTCCTAGGCCGAGCCCGCTTACATCTGG
CAGCTTTCATAGGTCATAGACTGCCCTCACAGACCAACACAAGTCTTTTCTGCACACTTTGTCCTCACTCGTGTGCACCC
AGGAAGAATTTTCCGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20484.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis