Browse Element(s) Details


OsAffx.29550.1.S1_at

Description tigr:9636.m03632
TID=OsAffx.29550.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3610011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g36070Os.47463.1.S1_x_at5/118+22595189..22598886transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g36070Os.14491.2.S1_x_at5/118+22595189..22598886transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g36080NANA8+22601950..22605279transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g36090NANA8+22612739..22613539hypothetical protein
LOC_Os08g36100OsAffx.29550.1.S1_at11/118+22614522..22617974hypothetical protein
LOC_Os08g36100Os.51427.1.S1_at1/118+22614522..22617974hypothetical protein
LOC_Os08g36110Os.50773.1.S1_at11/118+22621961..22623196expressed protein
LOC_Os08g36120OsAffx.20484.2.S1_at11/118+22628284..22629568retrotransposon protein, putative, unclassified
LOC_Os08g36120OsAffx.20484.1.S1_x_at2/118+22628284..22629568retrotransposon protein, putative, unclassified
LOC_Os08g36130OsAffx.447.1.S1_at1/118+22630037..22634586retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g36140Os.21784.1.S1_at11/118+22640134..22642316expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29550.1.S1_at--835--8811Chr08:22616470..22616494 (25 bp)
TGTTGGAGGTTGCTGACCAAGCCCT
LOC_Os08g36100
OsAffx.29550.1.S1_at--839--9511Chr08:22616494..22616518 (25 bp)
TCTCTGGTCCGCATTGTCAAGAGCT
LOC_Os08g36100
OsAffx.29550.1.S1_at--810--2651Chr08:22616570..22616594 (25 bp)
AAGCCATCGCGGAAGCTTGTCTCAG
LOC_Os08g36100
OsAffx.29550.1.S1_at--632--5331Chr08:22616581..22616605 (25 bp)
GAAGCTTGTCTCAGGGCCCTGCGTC
LOC_Os08g36100
OsAffx.29550.1.S1_at--466--9131Chr08:22616600..22616624 (25 bp)
TGCGTCGACACCGATATGCAGATGG
LOC_Os08g36100
OsAffx.29550.1.S1_at--746--6571Chr08:22616681..22616705 (25 bp)
GATTCCCCTCCGGATGGAGCTTTGG
LOC_Os08g36100
OsAffx.29550.1.S1_at--780--10091Chr08:22616725..22616749 (25 bp)
TAGGCAGCGGTGTCATCGATAACAT
LOC_Os08g36100
OsAffx.29550.1.S1_at--801--10231Chr08:22617461..22617485 (25 bp)
TTTGGAGCAGGTGAATTCGACCATC
LOC_Os08g36100
OsAffx.29550.1.S1_at--575--5211Chr08:22617473..22617497 (25 bp)
GAATTCGACCATCTTCATCTTGAAG
LOC_Os08g36100
OsAffx.29550.1.S1_at--1064--3131Chr08:22617474..22617887 (25 bp)
AATTCGGACCGAGACCGAGGCGATG
LOC_Os08g36100
OsAffx.29550.1.S1_at--242--691Chr08:22617916..22617940 (25 bp)
ATGACGAGGACGATTGTGGCCATGA
LOC_Os08g36100
Target Sequence 
TGTTGGAGGTTGCTGACCAAGCCCTCTCTGGTCCGCATTGTCAAGAGCTCCCCGACCACACCTGTCCTCGATTTGCACCC
TCCAATCAGGCCACTCTGCCAAGCCATCGCGGAAGCTTGTCTCAGGGCCCTGCGTCGACACCGATATGCAGATGGAGGCT
GGCAAGGAGGGAGGGGATTCGGGGTTGGTGGTGGCCATCAACATCCGCGCCGATTCCCCTCCGGATGGAGCTTTGGGAGG
GAGGAGCGGTAGTGGTAGGCAGCGGTGTCATCGATAACATGGTAGAAATGGAAGAAGGGAATGATGGAGTGGCGGAGGGG
ATTTTGGAGCAGGTGAATTCGACCATCTTCATCTTGAAGTCTGGATTAGGGGTGGGCAGAAAAAGACCGAACCGAAAAGA
CCGAGACCGAAAAGACCGAGACCAAGAAATTCGGACCGAGACCGAGGCGATGGGGAGGCATGGGGGCAGCGGATCCGGCG
ATGACGAGGACGATTGTGGCCATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29550.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis