Browse Element(s) Details


Os.53499.1.S1_at

Description gb:AK072969.1
DB_XREF= gi:32982992
TID=Os.53499.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53499 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023144D16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023144D16, full insert sequence.
FL= gb:AK072969.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0560011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g05556Os.49423.1.S1_at11/1111+2513385..2517848Signal recognition particle 54 kDa protein, chloroplast precursor, putative, expressed
LOC_Os11g05562Os.9376.1.S1_at10/1111+2518095..252404540S ribosomal protein S25, putative, expressed
LOC_Os11g05562OsAffx.29659.1.S1_at9/1111+2518095..252404540S ribosomal protein S25, putative, expressed
LOC_Os11g05570Os.54312.1.S1_at11/1111+2525648..2528553ribonuclease HI large subunit, putative, expressed
LOC_Os11g05580OsAffx.18690.1.S1_at11/1111+2530443..2531819hypothetical protein
LOC_Os11g05590OsAffx.7006.1.S1_at11/1111+2532826..2534187hypothetical protein
LOC_Os11g05600Os.53499.1.S1_at11/1111+2535682..2538894expressed protein
LOC_Os11g05614Os.54623.1.S2_at11/1111+2546455..2548851NAC-domain containing protein 90, putative, expressed
LOC_Os11g05614Os.54623.1.S1_at11/1111+2546455..2548851NAC-domain containing protein 90, putative, expressed
LOC_Os11g05630OsAffx.30829.2.S1_at1/1111+2550135..2550680SOS2-like protein kinase, putative
LOC_Os11g05630OsAffx.30829.2.S1_x_at1/1111+2550135..2550680SOS2-like protein kinase, putative
LOC_Os11g05640OsAffx.18691.1.S1_at11/1111+2556939..2559110bZIP transcription factor family protein, expressed
LOC_Os11g05640Os.57499.1.S1_x_at11/1111+2556939..2559110bZIP transcription factor family protein, expressed
LOC_Os11g05650OsAffx.30830.1.S1_at11/1111+2561105..2564404mRNA decapping enzyme, putative, expressed
LOC_Os11g05650Os.8763.1.S1_at11/1111+2561105..2564404mRNA decapping enzyme, putative, expressed
LOC_Os11g05650Os.51912.1.S1_at10/1111+2561105..2564404mRNA decapping enzyme, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53499.1.S1_at--205--3951Chr11:2536292..2536314 (23 bp)
CGGCTTCCTCGACTGAGGCGAAGAA
LOC_Os11g05600
Os.53499.1.S1_at--654--2571Chr11:2538470..2538494 (25 bp)
AACGGCTTATGATGCTTACCTTCGG
LOC_Os11g05600
Os.53499.1.S1_at--66--6331Chr11:2538480..2538504 (25 bp)
GATGCTTACCTTCGGCGCTAAATAG
LOC_Os11g05600
Os.53499.1.S1_at--713--2251Chr11:2538499..2538523 (25 bp)
AAATAGTTGTGACAGCACTCTTGGG
LOC_Os11g05600
Os.53499.1.S1_at--756--271Chr11:2538565..2538589 (25 bp)
ATATGGTATGCTCACTGCTCAGTTC
LOC_Os11g05600
Os.53499.1.S1_at--469--9091Chr11:2538580..2538604 (25 bp)
TGCTCAGTTCACCTCATAGGTCTAG
LOC_Os11g05600
Os.53499.1.S1_at--603--4291Chr11:2538591..2538615 (25 bp)
CCTCATAGGTCTAGAACTTCTTGCT
LOC_Os11g05600
Os.53499.1.S1_at--26--6111Chr11:2538737..2538761 (25 bp)
GAGGGAGTAGTTATGTTGCTTCGTA
LOC_Os11g05600
Os.53499.1.S1_at--637--8811Chr11:2538750..2538774 (25 bp)
TGTTGCTTCGTAACCAAAACTTGGG
LOC_Os11g05600
Os.53499.1.S1_at--779--7471Chr11:2538814..2538838 (25 bp)
GTGTGTTTTCCTGGCTTTGATTTAT
LOC_Os11g05600
Os.53499.1.S1_at--24--10811Chr11:2538838..2538862 (25 bp)
TTGTTTTATCAATCCTCTCTTACCA
LOC_Os11g05600
Target Sequence 
CGGCTTCCTCGACTGAGGCGAAGAATAAACGGCTTATGATGCTTACCTTCGGCGCTAAATAGTTGTGACAGCACTCTTGG
GGGGACCATTGCCCCTCAGCAACACAATTCCTATAAGGAAACATATGGTATGCTCACTGCTCAGTTCACCTCATAGGTCT
AGAACTTCTTGCTATCCCTTGGTTTTTTACGTAATAGAGGGAGTAGTTATGTTGCTTCGTAACCAAAACTTGGGTGTTTG
TGGTTATGGTAAAGGAGTTATGTACACATTTTTGTGTGTTTTCCTGGCTTTGATTTATTGTTTTATCAATCCTCTCTTAC
CA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53499.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis