Browse Element(s) Details


Os.54312.1.S1_at

Description gb:AK103273.1
DB_XREF= gi:32988482
TID=Os.54312.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54312 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033124I24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033124I24, full insert sequence.
FL= gb:AK103273.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0557011/11ribonuclease HI large subunit, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g05540Os.21289.1.S1_at11/1111+2496341..2501137rac GTPase activating protein 1, putative, expressed
LOC_Os11g05550Os.55491.1.S1_at11/1111+2502845..2504306expressed protein
LOC_Os11g05550Os.51098.1.S1_x_at1/1111+2502845..2504306expressed protein
LOC_Os11g05556Os.49423.1.S1_at11/1111+2513385..2517848Signal recognition particle 54 kDa protein, chloroplast precursor, putative, expressed
LOC_Os11g05562Os.9376.1.S1_at10/1111+2518095..252404540S ribosomal protein S25, putative, expressed
LOC_Os11g05562OsAffx.29659.1.S1_at9/1111+2518095..252404540S ribosomal protein S25, putative, expressed
LOC_Os11g05570Os.54312.1.S1_at11/1111+2525648..2528553ribonuclease HI large subunit, putative, expressed
LOC_Os11g05580OsAffx.18690.1.S1_at11/1111+2530443..2531819hypothetical protein
LOC_Os11g05590OsAffx.7006.1.S1_at11/1111+2532826..2534187hypothetical protein
LOC_Os11g05600Os.53499.1.S1_at11/1111+2535682..2538894expressed protein
LOC_Os11g05614Os.54623.1.S2_at11/1111+2546455..2548851NAC-domain containing protein 90, putative, expressed
LOC_Os11g05614Os.54623.1.S1_at11/1111+2546455..2548851NAC-domain containing protein 90, putative, expressed
LOC_Os11g05630OsAffx.30829.2.S1_at1/1111+2550135..2550680SOS2-like protein kinase, putative
LOC_Os11g05630OsAffx.30829.2.S1_x_at1/1111+2550135..2550680SOS2-like protein kinase, putative

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Gene Ontology Classification
GO idTypeName
GO:0003824molecular_functioncatalytic activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54312.1.S1_at--993--8831Chr11:2527579..2527603 (25 bp)
TGATAGCCTTTTCCCAGTTGTTAGT
LOC_Os11g05570
Os.54312.1.S1_at--304--7891Chr11:2527771..2527795 (25 bp)
GGTTACCAGAGACAGAGCCTTGAGA
LOC_Os11g05570
Os.54312.1.S1_at--721--3511Chr11:2527831..2527855 (25 bp)
CATGAACACTGGGTCTGGTTATCCA
LOC_Os11g05570
Os.54312.1.S1_at--499--6791Chr11:2527848..2527960 (25 bp)
GTTATCCAGGAGATCCTTCCACTAA
LOC_Os11g05570
Os.54312.1.S1_at--515--6511Chr11:2527988..2528012 (25 bp)
GATATTTGGATTCCCGTCTTTGGTT
LOC_Os11g05570
Os.54312.1.S1_at--1161--1811Chr11:2528034..2528058 (25 bp)
ACGCCCTTCTTCAATGACGCAATTG
LOC_Os11g05570
Os.54312.1.S1_at--326--2711Chr11:2528240..2528264 (25 bp)
AAGCTTAGGCTTTACTGGATTCAAA
LOC_Os11g05570
Os.54312.1.S1_at--671--5551Chr11:2528294..2528318 (25 bp)
GAAAGGCCGTTGCAAGTTCTTCCAG
LOC_Os11g05570
Os.54312.1.S1_at--372--10671Chr11:2528313..2528336 (24 bp)
TTCCAGGCTCGCAAACTTGAACTTA
LOC_Os11g05570
Os.54312.1.S1_at--553--611Chr11:2528354..2528378 (25 bp)
ATGCGTATCAGCTTCGTTGTCTGTA
LOC_Os11g05570
Os.54312.1.S1_at--1062--851Chr11:2528419..2528443 (25 bp)
ATGGCTTGTATTTCAGCTGTGACAC
LOC_Os11g05570
Target Sequence 
TGATAGCCTTTTCCCAGTTGTTAGTGGAGCAAGTATAGTTTCGAAGGTTACCAGAGACAGAGCCTTGAGAAACTGGGTAT
TTGATGAAACGGCTCAGAATATGCACATGAACACTGGGTCTGGTTATCCAGGAGATCCTTCCACTAAACAATGGTTAGAA
GATCACAAACATCCGATATTTGGATTCCCGTCTTTGGTTCGTTTTAGCTGGGGAACTTGCACGCCCTTCTTCAATGACGC
AATTGAAGTTACCTGGGAGTCCAATGAACTTGAAGAAGATGCAGGTAGCAACGGTAGTGTTAAGAGACAGGTCAAGCTAT
CAAGCTTAGGCTTTACTGGATTCAAAAGGAAGTCTGAGGAGATCGACTCAAGTGGGAAAGGCCGTTGCAAGTTCTTCCAG
GCTCGCAAACTTGAACTTATCAGGAAGTTTCAGTGATGCGTATCAGCTTCGTTGTCTGTACTACTAACTTTAAGTCAGAG
TAGAAGGCTCTTATGGGGTTATGGCTTGTATTTCAGCTGTGACAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54312.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis