Browse Element(s) Details


Os.54623.1.S2_at

Description gb:AK106277.1
DB_XREF= gi:32991486
TID=Os.54623.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54623 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-154-A12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-100-H06, full insert sequence.
FL= gb:AK109939.1 gb:AK106277.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0561411/11NAC-domain containing protein 90, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g05562Os.9376.1.S1_at10/1111+2518095..252404540S ribosomal protein S25, putative, expressed
LOC_Os11g05562OsAffx.29659.1.S1_at9/1111+2518095..252404540S ribosomal protein S25, putative, expressed
LOC_Os11g05570Os.54312.1.S1_at11/1111+2525648..2528553ribonuclease HI large subunit, putative, expressed
LOC_Os11g05580OsAffx.18690.1.S1_at11/1111+2530443..2531819hypothetical protein
LOC_Os11g05590OsAffx.7006.1.S1_at11/1111+2532826..2534187hypothetical protein
LOC_Os11g05600Os.53499.1.S1_at11/1111+2535682..2538894expressed protein
LOC_Os11g05614Os.54623.1.S2_at11/1111+2546455..2548851NAC-domain containing protein 90, putative, expressed
LOC_Os11g05614Os.54623.1.S1_at11/1111+2546455..2548851NAC-domain containing protein 90, putative, expressed
LOC_Os11g05630OsAffx.30829.2.S1_at1/1111+2550135..2550680SOS2-like protein kinase, putative
LOC_Os11g05630OsAffx.30829.2.S1_x_at1/1111+2550135..2550680SOS2-like protein kinase, putative
LOC_Os11g05640OsAffx.18691.1.S1_at11/1111+2556939..2559110bZIP transcription factor family protein, expressed
LOC_Os11g05640Os.57499.1.S1_x_at11/1111+2556939..2559110bZIP transcription factor family protein, expressed
LOC_Os11g05650OsAffx.30830.1.S1_at11/1111+2561105..2564404mRNA decapping enzyme, putative, expressed
LOC_Os11g05650Os.8763.1.S1_at11/1111+2561105..2564404mRNA decapping enzyme, putative, expressed
LOC_Os11g05650Os.51912.1.S1_at10/1111+2561105..2564404mRNA decapping enzyme, putative, expressed
LOC_Os11g05660Os.55611.1.S1_s_at11/1111+2564900..2566295F-box domain containing protein, expressed
LOC_Os11g05680OsAffx.20484.1.S1_x_at1/1111+2573598..2574206hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0007275biological_processdevelopment
GO:0045449biological_processregulation of transcription
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54623.1.S2_at--917--5871Chr11:2548326..2548350 (25 bp)
GAGCGCAAAGAACCCGGCAGCCCAG
LOC_Os11g05614
Os.54623.1.S2_at--770--4271Chr11:2548396..2548420 (25 bp)
CCTGCGAGCGCTGGGACACGAACAA
LOC_Os11g05614
Os.54623.1.S2_at--396--4111Chr11:2548477..2548501 (25 bp)
CGAACGCGCGCTGGGACATGAACAA
LOC_Os11g05614
Os.54623.1.S2_at--19--1491Chr11:2548584..2548608 (25 bp)
AGCAAGAAGCATCGCTCGCAGGACG
LOC_Os11g05614
Os.54623.1.S2_at--38--1871Chr11:2548650..2548674 (25 bp)
ACGACGGTGGCAAAGCCGCAGCAGC
LOC_Os11g05614
Os.54623.1.S2_at--395--4492Chr11:2548706..2548730 (25 bp)
GCCGGAGCCAAGCATGCTTCCCATG
LOC_Os11g05614
Os.54623.1.S2_at--137--3371Chr11:2548733..2548757 (25 bp)
CACCTTCTTGATGGCCCGATAGCTT
LOC_Os11g05614
Os.54623.1.S2_at--1083--4531Chr11:2548746..2548770 (25 bp)
GCCCGATAGCTTCTGCTTGTGCATT
LOC_Os11g05614
Os.54623.1.S2_at--14--9711Chr11:2548771..2548795 (25 bp)
TCAACTTCAGATGAATCGGACTGTA
LOC_Os11g05614
Os.54623.1.S2_at--786--5391Chr11:2548814..2548838 (25 bp)
GAAGCATGTTATTCTTTGTGGGTCT
LOC_Os11g05614
Os.54623.1.S2_at--182--10571Chr11:2548825..2548849 (25 bp)
TTCTTTGTGGGTCTGTTTGTGATCA
LOC_Os11g05614
Target Sequence 
GAGCGCAAAGAACCCGGCAGCCCAGCGTCGTCGTCGTCAAGCAGCGGCGGGAAGCCCGGCCGAGCCGACTCCTGCGAGCG
CTGGGACACGAACAAGGCCAAGAACCAGATCATCAGCAGCGGCCGCCTCACGCCGGCGTCGTCGTCGTCGACGAACGCGC
GCTGGGACATGAACAAGGTCAAGAACACGGCGCCGCCGTCGAACAGCAACAAGCGGCCGGTGAGCCGCGGGTCCGCCTCG
GCCGAGCGCTGGGACATCAGCAAGAAGCATCGCTCGCAGGACGCCGCCGCCGCCGCTCTCGGCTCGGCGAGTGATCGGAA
GTTGACGACGGTGGCAAAGCCGCAGCAGCCGCTGTTCTCTGGGCCGGCGTTCCTGACCTCGCCGGAGCCAAGCATGCTTC
CCATGCCCACCTTCTTGATGGCCCGATAGCTTCTGCTTGTGCATTTCAACTTCAGATGAATCGGACTGTAGTTAGGATGG
GATTTGATGAAGCATGTTATTCTTTGTGGGTCTGTTTGTGATCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54623.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis