Browse Element(s) Details


OsAffx.18690.1.S1_at

Description tigr:9639.m00473
TID=OsAffx.18690.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0558011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g05556Os.49423.1.S1_at11/1111+2513385..2517848Signal recognition particle 54 kDa protein, chloroplast precursor, putative, expressed
LOC_Os11g05562Os.9376.1.S1_at10/1111+2518095..252404540S ribosomal protein S25, putative, expressed
LOC_Os11g05562OsAffx.29659.1.S1_at9/1111+2518095..252404540S ribosomal protein S25, putative, expressed
LOC_Os11g05570Os.54312.1.S1_at11/1111+2525648..2528553ribonuclease HI large subunit, putative, expressed
LOC_Os11g05580OsAffx.18690.1.S1_at11/1111+2530443..2531819hypothetical protein
LOC_Os11g05590OsAffx.7006.1.S1_at11/1111+2532826..2534187hypothetical protein
LOC_Os11g05600Os.53499.1.S1_at11/1111+2535682..2538894expressed protein
LOC_Os11g05614Os.54623.1.S2_at11/1111+2546455..2548851NAC-domain containing protein 90, putative, expressed
LOC_Os11g05614Os.54623.1.S1_at11/1111+2546455..2548851NAC-domain containing protein 90, putative, expressed
LOC_Os11g05630OsAffx.30829.2.S1_at1/1111+2550135..2550680SOS2-like protein kinase, putative
LOC_Os11g05630OsAffx.30829.2.S1_x_at1/1111+2550135..2550680SOS2-like protein kinase, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18690.1.S1_at--1050--2171Chr11:2530920..2530944 (25 bp)
ACACGGTTACTATTGGGTGCGCAAC
LOC_Os11g05580
OsAffx.18690.1.S1_at--670--2211Chr11:2530867..2530891 (25 bp)
ACAAGCCGCTGCTGATGGTCCGGTG
LOC_Os11g05580
OsAffx.18690.1.S1_at--401--1891Chr11:2530819..2530843 (25 bp)
ACGATTACCGCCATTGGTGCGCCGA
LOC_Os11g05580
OsAffx.18690.1.S1_at--705--2071Chr11:2530667..2530691 (25 bp)
ACATTGCCGGATCATGGGAGCTCCA
LOC_Os11g05580
OsAffx.18690.1.S1_at--164--8072Chr06:3668340..3668359 (20 bp)
GGAGCTCCATATTCTTCTTGGGATC
NONE
OsAffx.18690.1.S1_at--551--9591Chr11:2530636..2530660 (25 bp)
TCTTGGGATCCATTGTTACTGACTA
LOC_Os11g05580
OsAffx.18690.1.S1_at--765--10471Chr11:2530621..2530645 (25 bp)
TTACTGACTACTGCTTGGATGGGAT
LOC_Os11g05580
OsAffx.18690.1.S1_at--98--4611Chr11:2530582..2530606 (25 bp)
GCGACTGCGCCTACGGTGTGTATAA
LOC_Os11g05580
OsAffx.18690.1.S1_at--85--5371Chr11:2530554..2530578 (25 bp)
GAAGAACGGCACTTTCAGGTTCGAT
LOC_Os11g05580
OsAffx.18690.1.S1_at--216--3471Chr11:2530539..2530563 (25 bp)
CAGGTTCGATAATCCGGTGTCCATA
LOC_Os11g05580
OsAffx.18690.1.S1_at--646--6231Chr11:2530481..2530505 (25 bp)
GATGGATACCCACCTAAACGATGGA
LOC_Os11g05580
Target Sequence 
ACACGGTTACTATTGGGTGCGCAACCTCCACCTCGTCGAGTCGTGCACCGGCGACAAGCCGCTGCTGATGGTCCGGTGGC
GGTGGCGCCTCCCCGCCGTCTACGATTACCGCCATTGGTGCGCCGACGAGCTGAGCAAGGAGATCAAGCTGGACGTGTTC
GAGGCGGACATGGAGAATCGCCGGTGGTCGGAGGTGGAGGAGATAGGTGACCAGGCAATCTTCCTCGGCAACACCAACTC
CAAGGCAGTCCCGACATTGCCGGATCATGGGAGCTCCATATTCTTCTTGGGATCCATTGTTACTGACTACTGCTTGGATG
GGATCATCGATGGCATCGGCGACTGCGCCTACGGTGTGTATAACATGAAGAACGGCACTTTCAGGTTCGATAATCCGGTG
TCCATAAAGAGGGATAGGGTGCCTTTAGGGTTAGATGATGATGGATACCCACCTAAACGATGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18690.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis