Browse Element(s) Details


OsAffx.29659.1.S1_at

Description tigr:9639.m00472
TID=OsAffx.29659.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=signal recognition particle protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g055629/1140S ribosomal protein S25, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g05540Os.21289.1.S1_at11/1111+2496341..2501137rac GTPase activating protein 1, putative, expressed
LOC_Os11g05550Os.55491.1.S1_at11/1111+2502845..2504306expressed protein
LOC_Os11g05550Os.51098.1.S1_x_at1/1111+2502845..2504306expressed protein
LOC_Os11g05556Os.49423.1.S1_at11/1111+2513385..2517848Signal recognition particle 54 kDa protein, chloroplast precursor, putative, expressed
LOC_Os11g05562Os.9376.1.S1_at10/1111+2518095..252404540S ribosomal protein S25, putative, expressed
LOC_Os11g05562OsAffx.29659.1.S1_at9/1111+2518095..252404540S ribosomal protein S25, putative, expressed
LOC_Os11g05570Os.54312.1.S1_at11/1111+2525648..2528553ribonuclease HI large subunit, putative, expressed
LOC_Os11g05580OsAffx.18690.1.S1_at11/1111+2530443..2531819hypothetical protein
LOC_Os11g05590OsAffx.7006.1.S1_at11/1111+2532826..2534187hypothetical protein
LOC_Os11g05600Os.53499.1.S1_at11/1111+2535682..2538894expressed protein
LOC_Os11g05614Os.54623.1.S2_at11/1111+2546455..2548851NAC-domain containing protein 90, putative, expressed
LOC_Os11g05614Os.54623.1.S1_at11/1111+2546455..2548851NAC-domain containing protein 90, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29659.1.S1_at--88--9291NONE
TCCGAGAGGCTCAGGTTTTCTATTA
NONE
OsAffx.29659.1.S1_at--442--6211NONE
GAGGCTCAGGTTTTCTATTACATTA
NONE
OsAffx.29659.1.S1_at--899--7871Chr11:2519333..2519356 (24 bp)
GGTTTTCTATTACATTAGAGTTCCA
LOC_Os11g05562
OsAffx.29659.1.S1_at--737--10031Chr11:2519347..2519370 (24 bp)
TAGAGTTCCAACAATCACAGGTATC
LOC_Os11g05562
OsAffx.29659.1.S1_at--100--9691Chr11:2519402..2519422 (21 bp)
TCACAGGTATCAGTTCCGGTACTCA
LOC_Os11g05562
OsAffx.29659.1.S1_at--559--6891Chr11:2519404..2519428 (25 bp)
GTATCAGTTCCGGTACTCAACTATA
LOC_Os11g05562
OsAffx.29659.1.S1_at--444--9711Chr11:2519420..2519444 (25 bp)
TCAACTATAAAGTTTGGTACCTACG
LOC_Os11g05562
OsAffx.29659.1.S1_at--485--7851Chr11:2519435..2519459 (25 bp)
GGTACCTACGAGAAAATTGGCATTT
LOC_Os11g05562
OsAffx.29659.1.S1_at--1092--1091Chr11:2519473..2519497 (25 bp)
AGTGGGTATCGTTGGAATTTCATTC
LOC_Os11g05562
OsAffx.29659.1.S1_at--591--191Chr11:2519489..2519513 (25 bp)
ATTTCATTCCACAAATTGGTTTCGC
LOC_Os11g05562
OsAffx.29659.1.S1_at--1054--6832Chr11:2519507..2519531 (25 bp)
GTTTCGCTAAAATACCACTATCAAA
LOC_Os11g05562
Target Sequence 
TCCGAGAGGCTCAGGTTTTCTATTACATTAGAGTTCCAACAATCACAGGTATCAGTTCCGGTACTCAACTATAAAGTTTG
GTACCTACGAGAAAATTGGCATTTTGTGATTGTCAAAAGTGGGTATCGTTGGAATTTCATTCCACAAATTGGTTTCGCTA
AAATACCACTATCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29659.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis