Browse Element(s) Details


Os.8763.1.S1_at

Description gb:AU172467
DB_XREF= gi:12622254
DB_XREF=AU172467
CLONE=E1212
TID=Os.8763.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.8763 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_563814.1 (A.thaliana) expressed protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0565011/11mRNA decapping enzyme, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g05600Os.53499.1.S1_at11/1111+2535682..2538894expressed protein
LOC_Os11g05614Os.54623.1.S2_at11/1111+2546455..2548851NAC-domain containing protein 90, putative, expressed
LOC_Os11g05614Os.54623.1.S1_at11/1111+2546455..2548851NAC-domain containing protein 90, putative, expressed
LOC_Os11g05630OsAffx.30829.2.S1_at1/1111+2550135..2550680SOS2-like protein kinase, putative
LOC_Os11g05630OsAffx.30829.2.S1_x_at1/1111+2550135..2550680SOS2-like protein kinase, putative
LOC_Os11g05640OsAffx.18691.1.S1_at11/1111+2556939..2559110bZIP transcription factor family protein, expressed
LOC_Os11g05640Os.57499.1.S1_x_at11/1111+2556939..2559110bZIP transcription factor family protein, expressed
LOC_Os11g05650OsAffx.30830.1.S1_at11/1111+2561105..2564404mRNA decapping enzyme, putative, expressed
LOC_Os11g05650Os.8763.1.S1_at11/1111+2561105..2564404mRNA decapping enzyme, putative, expressed
LOC_Os11g05650Os.51912.1.S1_at10/1111+2561105..2564404mRNA decapping enzyme, putative, expressed
LOC_Os11g05660Os.55611.1.S1_s_at11/1111+2564900..2566295F-box domain containing protein, expressed
LOC_Os11g05680OsAffx.20484.1.S1_x_at1/1111+2573598..2574206hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8763.1.S1_at--709--1611Chr11:2564119..2564143 (25 bp)
AGCTGTATGGAGTTGTGGCCGCCAC
LOC_Os11g05650
Os.8763.1.S1_at--494--10831Chr11:2564131..2564155 (25 bp)
TTGTGGCCGCCACAAGAGTGCTTGT
LOC_Os11g05650
Os.8763.1.S1_at--1037--1331Chr11:2564145..2564169 (25 bp)
AGAGTGCTTGTGTTCTTTGTGAGTT
LOC_Os11g05650
Os.8763.1.S1_at--744--6911Chr11:2564172..2564196 (25 bp)
GTATGCTTTAGTGCTTGGACTTCTG
LOC_Os11g05650
Os.8763.1.S1_at--416--8531Chr11:2564187..2564211 (25 bp)
TGGACTTCTGTATAGCTGTCTTCAT
LOC_Os11g05650
Os.8763.1.S1_at--946--3871Chr11:2564194..2564218 (25 bp)
CTGTATAGCTGTCTTCATTGTGGTG
LOC_Os11g05650
Os.8763.1.S1_at--940--8651Chr11:2564212..2564236 (25 bp)
TGTGGTGATGTAGAGTCCTTATAGC
LOC_Os11g05650
Os.8763.1.S1_at--330--9251Chr11:2564227..2564251 (25 bp)
TCCTTATAGCAGTGGTTGGCAGTAT
LOC_Os11g05650
Os.8763.1.S1_at--229--231Chr11:2564257..2564281 (25 bp)
ATATTCCTTATTTCACGTACTGTCA
LOC_Os11g05650
Os.8763.1.S1_at--36--191Chr11:2564266..2564290 (25 bp)
ATTTCACGTACTGTCAATGTCATAG
LOC_Os11g05650
Os.8763.1.S1_at--488--9731Chr11:2564351..2564375 (25 bp)
TAATTTTTCGTGTGATTTACTGAGC
LOC_Os11g05650
Target Sequence 
AGCTGTATGGAGTTGTGGCCGCCACAAGAGTGCTTGTGTTCTTTGTGAGTTTTGTATGCTTTAGTGCTTGGACTTCTGTA
TAGCTGTCTTCATTGTGGTGATGTAGAGTCCTTATAGCAGTGGTTGGCAGTATTTATAATATTCCTTATTTCACGTACTG
TCAATGTCATAGTATATTTATGTAACAAAAAACGGAAGTAAAACAGGACTTGTGTAAGGGNTGTTAAATATCATAATTTT
TCGTGTGATTTACTGAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8763.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis