Browse Element(s) Details

Os.55611.1.S1_s_at

Description

gb:AK108413.1
DB_XREF= gi:32993622
TID=Os.55611.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55611 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-142-H04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-142-H04, full insert sequence.
FL= gb:AK108413.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os11g05660	11/11	F-box domain containing protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os11g05614	Os.54623.1.S2_at	11/11	11	+	2546455..2548851	NAC-domain containing protein 90, putative, expressed
LOC_Os11g05614	Os.54623.1.S1_at	11/11	11	+	2546455..2548851	NAC-domain containing protein 90, putative, expressed
LOC_Os11g05630	OsAffx.30829.2.S1_at	1/11	11	+	2550135..2550680	SOS2-like protein kinase, putative
LOC_Os11g05630	OsAffx.30829.2.S1_x_at	1/11	11	+	2550135..2550680	SOS2-like protein kinase, putative
LOC_Os11g05640	OsAffx.18691.1.S1_at	11/11	11	+	2556939..2559110	bZIP transcription factor family protein, expressed
LOC_Os11g05640	Os.57499.1.S1_x_at	11/11	11	+	2556939..2559110	bZIP transcription factor family protein, expressed
LOC_Os11g05650	OsAffx.30830.1.S1_at	11/11	11	+	2561105..2564404	mRNA decapping enzyme, putative, expressed
LOC_Os11g05650	Os.8763.1.S1_at	11/11	11	+	2561105..2564404	mRNA decapping enzyme, putative, expressed
LOC_Os11g05650	Os.51912.1.S1_at	10/11	11	+	2561105..2564404	mRNA decapping enzyme, putative, expressed
LOC_Os11g05660	Os.55611.1.S1_s_at	11/11	11	+	2564900..2566295	F-box domain containing protein, expressed
LOC_Os11g05680	OsAffx.20484.1.S1_x_at	1/11	11	+	2573598..2574206	hypothetical protein

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Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.55611.1.S1_s_at--575--293	1	Chr11:2565157..2565181 (25 bp)	AAGGCGAGGCGTGAGGGCATCGTCG	LOC_Os11g05660
Os.55611.1.S1_s_at--195--713	1	Chr11:2565085..2565109 (25 bp)	GTCATGCTCACCTTCCGGTGATCAT	LOC_Os11g05660
Os.55611.1.S1_s_at--973--193	1	Chr11:2565026..2565050 (25 bp)	ACGGCATAAGCAGCGTACGTAGCTG	LOC_Os11g05660
Os.55611.1.S1_s_at--165--507	1	Chr11:2565017..2565041 (25 bp)	GCAGCGTACGTAGCTGGGTACCGTA	LOC_Os11g05660
Os.55611.1.S1_s_at--186--993	1	Chr11:2565011..2565035 (25 bp)	TACGTAGCTGGGTACCGTACAATTT	LOC_Os11g05660
Os.55611.1.S1_s_at--68--1001	1	Chr11:2565007..2565031 (25 bp)	TAGCTGGGTACCGTACAATTTCGTT	LOC_Os11g05660
Os.55611.1.S1_s_at--239--471	1	Chr11:2565005..2565029 (25 bp)	GCTGGGTACCGTACAATTTCGTTGA	LOC_Os11g05660
Os.55611.1.S1_s_at--646--863	1	Chr11:2565003..2565027 (25 bp)	TGGGTACCGTACAATTTCGTTGAGA	LOC_Os11g05660
Os.55611.1.S1_s_at--310--697	1	Chr11:2565000..2565024 (25 bp)	GTACCGTACAATTTCGTTGAGAATG	LOC_Os11g05660
Os.55611.1.S1_s_at--729--645	1	Chr11:2564958..2564982 (25 bp)	GATAAAAGTGGTACTAGTGTCGTAG	LOC_Os11g05660
Os.55611.1.S1_s_at--318--749	1	Chr11:2564951..2564975 (25 bp)	GTGGTACTAGTGTCGTAGGAACTGT	LOC_Os11g05660

Target Sequence

AAGGCGAGGCGTGAGGGCATCGTCGACCTCTGCTGCTCCGGCGTCGGCGCGGCGGCGTTCGTCGGCTTCCTCGTCATGCT
CACCTTCCGGTGATCATGCGGCGGCGTCCGGCGAGCGGCGGGGCAGGCATAACGGCATAAGCAGCGTACGTAGCTGGGTA
CCGTACAATTTCGTTGAGAATGGCAAGAAATGTAAATATGATAAAAGTGGTACTAGTGTCGTAGGAACTGT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis