Browse Element(s) Details


OsAffx.8606.1.S1_s_at

Description gb:XM_354489.1
DB_XREF= gi:35191844
GEN=P0560B08.21
TID=OsAffx.8606.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group).
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0594011/11transposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g05900Os.8594.1.S1_at11/1112+2707478..2712514rac GTPase activating protein 1, putative, expressed
LOC_Os12g05909NANA12+2715585..2715720NA
LOC_Os12g05920Os.51064.1.S1_at9/1112+2723050..2725350expressed protein
LOC_Os12g05930OsAffx.7495.1.S1_at11/1112+2731573..2732169Leucine Rich Repeat family protein
LOC_Os12g05940OsAffx.8606.1.S1_s_at11/1112+2736748..2739113transposon protein, putative, unclassified
LOC_Os12g05940OsAffx.31603.1.S1_at11/1112+2736748..2739113transposon protein, putative, unclassified
LOC_Os12g05940OsAffx.31255.1.S1_at1/1112+2736748..2739113transposon protein, putative, unclassified
LOC_Os12g05950OsAffx.19511.1.S1_at11/1112+2740006..2740426hypothetical protein
LOC_Os12g05960OsAffx.31604.1.S1_at11/1112+2743306..2744085hypothetical protein
LOC_Os12g05970OsAffx.7496.1.S1_at11/1112+2746577..2749107hypothetical protein
LOC_Os12g05980NANA12+2750933..2751430hypothetical protein
LOC_Os12g05990Os.19369.1.S1_at11/1112+2761324..2762601No apical meristem protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8606.1.S1_s_at--901--9713Chr12:2738869..2738893 (25 bp)
TAAGAATGGGAATGAAGTAGCACAT
LOC_Os12g05940
OsAffx.8606.1.S1_s_at--8--5232Chr12:2738954..2738978 (25 bp)
GAATTTTTGGGTAGCTATACCCAGC
LOC_Os12g05940
OsAffx.8606.1.S1_s_at--254--10412Chr12:2738958..2738982 (25 bp)
TTTTGGGTAGCTATACCCAGCTACT
LOC_Os12g05940
OsAffx.8606.1.S1_s_at--561--8632Chr12:2738961..2738985 (25 bp)
TGGGTAGCTATACCCAGCTACTGGC
LOC_Os12g05940
OsAffx.8606.1.S1_s_at--729--7832Chr12:2738963..2738987 (25 bp)
GGTAGCTATACCCAGCTACTGGCGG
LOC_Os12g05940
OsAffx.8606.1.S1_s_at--265--9992Chr12:2738965..2738987 (23 bp)
TAGCTATACCCAGCTACTGGCGGGT
LOC_Os12g05940
OsAffx.8606.1.S1_s_at--913--1552Chr12:2738966..2738987 (22 bp)
AGCTATACCCAGCTACTGGCGGGTG
LOC_Os12g05940
OsAffx.8606.1.S1_s_at--864--3692Chr12:2738968..2739071 (25 bp)
CTATACCCAGCTACTGGCGGGTGAT
LOC_Os12g05940
OsAffx.8606.1.S1_s_at--32--10192Chr12:2738969..2739072 (25 bp)
TATACCCAGCTACTGGCGGGTGATT
LOC_Os12g05940
OsAffx.8606.1.S1_s_at--834--9952Chr12:2738971..2739074 (25 bp)
TACCCAGCTACTGGCGGGTGATTCA
LOC_Os12g05940
OsAffx.8606.1.S1_s_at--115--3732Chr12:2738978..2739081 (25 bp)
CTACTGGCGGGTGATTCAGATGGAT
LOC_Os12g05940
Target Sequence 
TAAGAATGGGAATGAAGTAGCACATGTTGAGCCATTGGAAGAGAACATATTGGAGAATAGTACAAAAGAATCTCACCAGG
GCTTTGAATTTTTGGGTAGCTATACCCAGCTACTGGCGGGTGATTCAGATGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8606.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis