Browse Element(s) Details


OsAffx.19511.1.S1_at

Description tigr:9640.m00515
TID=OsAffx.19511.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0595011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g05909NANA12+2715585..2715720NA
LOC_Os12g05920Os.51064.1.S1_at9/1112+2723050..2725350expressed protein
LOC_Os12g05930OsAffx.7495.1.S1_at11/1112+2731573..2732169Leucine Rich Repeat family protein
LOC_Os12g05940OsAffx.8606.1.S1_s_at11/1112+2736748..2739113transposon protein, putative, unclassified
LOC_Os12g05940OsAffx.31603.1.S1_at11/1112+2736748..2739113transposon protein, putative, unclassified
LOC_Os12g05940OsAffx.31255.1.S1_at1/1112+2736748..2739113transposon protein, putative, unclassified
LOC_Os12g05950OsAffx.19511.1.S1_at11/1112+2740006..2740426hypothetical protein
LOC_Os12g05960OsAffx.31604.1.S1_at11/1112+2743306..2744085hypothetical protein
LOC_Os12g05970OsAffx.7496.1.S1_at11/1112+2746577..2749107hypothetical protein
LOC_Os12g05980NANA12+2750933..2751430hypothetical protein
LOC_Os12g05990Os.19369.1.S1_at11/1112+2761324..2762601No apical meristem protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19511.1.S1_at--1136--5571Chr12:2740039..2740063 (25 bp)
GAAATGTGCCAAGTACTTAGAGCAT
LOC_Os12g05950
OsAffx.19511.1.S1_at--1143--2831Chr12:2740049..2740073 (25 bp)
AAGTACTTAGAGCATGGTCCATGGA
LOC_Os12g05950
OsAffx.19511.1.S1_at--679--7791Chr12:2740064..2740088 (25 bp)
GGTCCATGGAGGTTGGAGGCCACAT
LOC_Os12g05950
OsAffx.19511.1.S1_at--1153--6211Chr12:2740079..2740103 (25 bp)
GAGGCCACATGATCGTAGTGGTCTC
LOC_Os12g05950
OsAffx.19511.1.S1_at--814--711Chr12:2740087..2740111 (25 bp)
ATGATCGTAGTGGTCTCATGTGGGC
LOC_Os12g05950
OsAffx.19511.1.S1_at--283--9531Chr12:2740100..2740124 (25 bp)
TCTCATGTGGGCTATATGGGCTGAA
LOC_Os12g05950
OsAffx.19511.1.S1_at--1006--8291Chr12:2740109..2740133 (25 bp)
GGCTATATGGGCTGAAACCAAATAT
LOC_Os12g05950
OsAffx.19511.1.S1_at--537--4591Chr12:2740119..2740143 (25 bp)
GCTGAAACCAAATATAGGCCACACC
LOC_Os12g05950
OsAffx.19511.1.S1_at--795--2251Chr12:2740128..2740152 (25 bp)
AAATATAGGCCACACCTTCCACAAT
LOC_Os12g05950
OsAffx.19511.1.S1_at--996--871Chr12:2740134..2740158 (25 bp)
AGGCCACACCTTCCACAATGGAGGT
LOC_Os12g05950
OsAffx.19511.1.S1_at--399--10691Chr12:2740144..2740168 (25 bp)
TTCCACAATGGAGGTCACACTAGGG
LOC_Os12g05950
Target Sequence 
GAAATGTGCCAAGTACTTAGAGCATGGTCCATGGAGGTTGGAGGCCACATGATCGTAGTGGTCTCATGTGGGCTATATGG
GCTGAAACCAAATATAGGCCACACCTTCCACAATGGAGGTCACACTAGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19511.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis