Browse Element(s) Details


Os.26569.1.S1_at

Description gb:AK072016.1
DB_XREF= gi:32982039
TID=Os.26569.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.26569 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013104D16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013102F20, full insert sequence.
FL= gb:AK072016.1 gb:AK098998.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g096049/11O-methyltransferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g09580Os.50349.1.S2_at11/114+5115237..5122121expressed protein
LOC_Os04g09580Os.50349.1.S1_at11/114+5115237..5122121expressed protein
LOC_Os04g09580Os.33361.1.S1_at4/114+5115237..5122121expressed protein
LOC_Os04g09580Os.52162.1.S1_x_at3/114+5115237..5122121expressed protein
LOC_Os04g09580Os.33361.1.S1_x_at3/114+5115237..5122121expressed protein
LOC_Os04g09580Os.52176.1.S1_at1/114+5115237..5122121expressed protein
LOC_Os04g09590OsAffx.25987.2.S1_at11/114+5132099..5133394Transferase family protein
LOC_Os04g09604Os.26569.1.S1_at9/114+5141927..5147482O-methyltransferase family protein, expressed
LOC_Os04g09620OsAffx.25944.1.S1_at11/114+5148842..5149852hypothetical protein
LOC_Os04g09630OsAffx.21465.1.S1_x_at2/114+5150374..5151027retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g09640OsAffx.25945.1.S1_at10/114+5152796..5155297hypothetical protein
LOC_Os04g09654Os.10277.1.S1_at9/114+5158495..5166516O-methyltransferase family protein, expressed
LOC_Os04g09654Os.19369.1.S1_at1/114+5158495..5166516O-methyltransferase family protein, expressed
LOC_Os04g09670NANA4+5169870..5171591Caffeic acid 3-O-methyltransferase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009809biological_processlignin biosynthesis
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0005829cellular_componentcytosol
GO:0047763molecular_functioncaffeate O-methyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26569.1.S1_at--858--2331NONE
AAAGATGATCCTCCACATGCAAAAC
NONE
Os.26569.1.S1_at--285--2651Chr04:5147028..5147052 (25 bp)
AAGCCCTGCCGGACAATGGCAAGGT
LOC_Os04g09604
Os.26569.1.S1_at--731--71Chr04:5147054..5147078 (25 bp)
ATTGCTGTTGAGATTGTCCTCCCGA
LOC_Os04g09604
Os.26569.1.S1_at--83--1511Chr04:5147101..5147125 (25 bp)
AGCACGATACCCGTTCCAGATGGAC
LOC_Os04g09604
Os.26569.1.S1_at--1146--711Chr04:5147126..5147150 (25 bp)
ATGATCATGCTCAGCAATTCCCGGG
LOC_Os04g09604
Os.26569.1.S1_at--212--8051Chr04:5147173..5147197 (25 bp)
GGAGTTCGCCAAGCTAGCCACGGAC
LOC_Os04g09604
Os.26569.1.S1_at--179--3711Chr04:5147186..5147210 (25 bp)
CTAGCCACGGACTCTGGTTTCAGTG
LOC_Os04g09604
Os.26569.1.S1_at--635--7871Chr04:5147201..5147225 (25 bp)
GGTTTCAGTGGTGCCTTGCGAACAA
LOC_Os04g09604
Os.26569.1.S1_at--517--10691Chr04:5147216..5147240 (25 bp)
TTGCGAACAACCTACATCTTGGCCA
LOC_Os04g09604
Os.26569.1.S1_at--778--411Chr04:5147231..5147255 (25 bp)
ATCTTGGCCAACTATTGGGTTCTTG
LOC_Os04g09604
Os.26569.1.S1_at--104--2991NONE
AATGTGTGCATGGTTATTTCAATAC
NONE
Target Sequence 
AAAGATGATCCTCCACATGCAAAACGATGAGGACTGCATCAAGATCCTCAAGAATTGCCACCAAGCCCTGCCGGACAATG
GCAAGGTGATTGCTGTTGAGATTGTCCTCCCGACGATCCCAGATCTGGCCCAAACAGCACGATACCCGTTCCAGATGGAC
ATGATCATGCTCAGCAATTCCCGGGGAGGAAAGGAGAGGACAGAGCTGGAGTTCGCCAAGCTAGCCACGGACTCTGGTTT
CAGTGGTGCCTTGCGAACAACCTACATCTTGGCCAACTATTGGGTTCTTGAGTTCAGCAAGTAGCTCTGAAAAATCATGT
CAAGTTCAATTTGCTAAGCATTTTAATGTGTGCATGGTTATTTCAATAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26569.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis