Browse Element(s) Details


OsAffx.25945.1.S1_at

Description tigr:9632.m00833
TID=OsAffx.25945.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0964010/11hypothetical protein
LOC_Os04g553301/11transposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g09590OsAffx.25987.2.S1_at11/114+5132099..5133394Transferase family protein
LOC_Os04g09604Os.26569.1.S1_at9/114+5141927..5147482O-methyltransferase family protein, expressed
LOC_Os04g09620OsAffx.25944.1.S1_at11/114+5148842..5149852hypothetical protein
LOC_Os04g09630OsAffx.21465.1.S1_x_at2/114+5150374..5151027retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g09640OsAffx.25945.1.S1_at10/114+5152796..5155297hypothetical protein
LOC_Os04g09654Os.10277.1.S1_at9/114+5158495..5166516O-methyltransferase family protein, expressed
LOC_Os04g09654Os.19369.1.S1_at1/114+5158495..5166516O-methyltransferase family protein, expressed
LOC_Os04g09670NANA4+5169870..5171591Caffeic acid 3-O-methyltransferase, putative, expressed
LOC_Os04g09680NANA4+5174012..5174764O-methyltransferase family protein
LOC_Os04g09690OsAffx.22368.1.S1_x_at1/114+5176458..5179414retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g09700NANA4+5180295..5182271retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25945.1.S1_at--544--4835Chr04:32693149..32693173 (25 bp)
GCTAATGGCGGTGGCAAATTGGCTC
LOC_Os04g55330
OsAffx.25945.1.S1_at--498--2351Chr04:5152917..5152941 (25 bp)
AAAGCCGCCGCAGCGGGTATAGCGA
LOC_Os04g09640
OsAffx.25945.1.S1_at--699--1631Chr04:5152928..5152952 (25 bp)
AGCGGGTATAGCGATGCGGGAGTGA
LOC_Os04g09640
OsAffx.25945.1.S1_at--379--7651Chr04:5154627..5154646 (20 bp)
GGGATGGTGAACTATATATGCGTAT
LOC_Os04g09640
OsAffx.25945.1.S1_at--882--2731Chr04:5154655..5154679 (25 bp)
AAGAAATATATATCTGAAACCCAGG
LOC_Os04g09640
OsAffx.25945.1.S1_at--116--5551NONE
GAAACCCAGGAATACATATGCAAAT
NONE
OsAffx.25945.1.S1_at--419--3572Chr04:5155192..5155216 (25 bp)
CATTTTAGTGTGATTTTGAACCAAA
LOC_Os04g09640
OsAffx.25945.1.S1_at--935--151Chr04:5155204..5155228 (25 bp)
ATTTTGAACCAAAGCCATGCCATTG
LOC_Os04g09640
OsAffx.25945.1.S1_at--607--5411Chr04:5155209..5155233 (25 bp)
GAACCAAAGCCATGCCATTGAGCTA
LOC_Os04g09640
OsAffx.25945.1.S1_at--1015--3271Chr04:5155213..5155237 (25 bp)
CAAAGCCATGCCATTGAGCTAATAA
LOC_Os04g09640
OsAffx.25945.1.S1_at--457--4431Chr04:5155217..5155241 (25 bp)
GCCATGCCATTGAGCTAATAAAAAG
LOC_Os04g09640
Target Sequence 
GCTAATGGCGGTGGCAAATTGGCTCGGCGGCGGCTCCAGCGGCGGCGAGCGGCGACCGGAGGAGTGGAAAAGCCGCCGCA
GCGGGTATAGCGATGCGGGAGTGATGGAGGGCACGGGAGAGAGCGGCGGAAAGAGGAAAAATGTGGAAGGGAGTGCGGGG
ATGGTGAACTATATATGCGTATGGGGCTTAAAGAAATATATATCTGAAACCCAGGAATACATATGCAAATTTCATTTTAG
TGTGATTTTGAACCAAAGCCATGCCATTGAGCTAATAAAAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25945.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis