Browse Element(s) Details


OsAffx.25987.2.S1_at

Description tigr:9632.m00828
TID=OsAffx.25987.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Transferase family
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0959011/11Transferase family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g09550OsAffx.25942.1.S1_at10/114+5108105..5109814expressed protein
LOC_Os04g09560OsAffx.13734.1.S1_at9/114+5110836..5112563CXC domain containing TSO1-like protein 1, putative
LOC_Os04g09580Os.50349.1.S2_at11/114+5115237..5122121expressed protein
LOC_Os04g09580Os.50349.1.S1_at11/114+5115237..5122121expressed protein
LOC_Os04g09580Os.33361.1.S1_at4/114+5115237..5122121expressed protein
LOC_Os04g09580Os.52162.1.S1_x_at3/114+5115237..5122121expressed protein
LOC_Os04g09580Os.33361.1.S1_x_at3/114+5115237..5122121expressed protein
LOC_Os04g09580Os.52176.1.S1_at1/114+5115237..5122121expressed protein
LOC_Os04g09570Os.50349.2.S1_at11/114+5115602..5116322expressed protein
LOC_Os04g09590OsAffx.25987.2.S1_at11/114+5132099..5133394Transferase family protein
LOC_Os04g09604Os.26569.1.S1_at9/114+5141927..5147482O-methyltransferase family protein, expressed
LOC_Os04g09620OsAffx.25944.1.S1_at11/114+5148842..5149852hypothetical protein
LOC_Os04g09630OsAffx.21465.1.S1_x_at2/114+5150374..5151027retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g09640OsAffx.25945.1.S1_at10/114+5152796..5155297hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0016740molecular_functiontransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25987.2.S1_at--141--1971Chr04:5132475..5132499 (25 bp)
ACTGCGTCACCTCGCAGGTGGCCGT
LOC_Os04g09590
OsAffx.25987.2.S1_at--552--1751Chr04:5132421..5132445 (25 bp)
ACCTCAAGCACGTCGTCAGGCTGAT
LOC_Os04g09590
OsAffx.25987.2.S1_at--179--1911Chr04:5132412..5132436 (25 bp)
ACGTCGTCAGGCTGATCCGGCGAGC
LOC_Os04g09590
OsAffx.25987.2.S1_at--277--4391Chr04:5132389..5132413 (25 bp)
GCCAAGGAGGAGATACCGTTGCAGT
LOC_Os04g09590
OsAffx.25987.2.S1_at--888--8011Chr04:5132384..5132408 (25 bp)
GGAGGAGATACCGTTGCAGTTCAAG
LOC_Os04g09590
OsAffx.25987.2.S1_at--857--1911Chr04:5132337..5132361 (25 bp)
ACGGGAAACGCGTCAAGCAGCTGGC
LOC_Os04g09590
OsAffx.25987.2.S1_at--1138--8451Chr04:5132316..5132340 (25 bp)
TGGCCGGCGTGCTGTTCGGGTACAG
LOC_Os04g09590
OsAffx.25987.2.S1_at--695--7711Chr04:5132220..5132244 (25 bp)
GGGTGATGTGCCACTTCGAGCCGAC
LOC_Os04g09590
OsAffx.25987.2.S1_at--21--3331Chr04:5132209..5132233 (25 bp)
CACTTCGAGCCGACGGGCGTGCCGA
LOC_Os04g09590
OsAffx.25987.2.S1_at--1051--4631Chr04:5132145..5132169 (25 bp)
GCGTTCTGTCGCTCTGCGTCAGGGA
LOC_Os04g09590
OsAffx.25987.2.S1_at--478--9491Chr04:5132133..5132157 (25 bp)
TCTGCGTCAGGGACGAGCACGTCGA
LOC_Os04g09590
Target Sequence 
ACTGCGTCACCTCGCAGGTGGCCGTGCCGACGAGCGACGAGGTGGCGAACGGCGACCTCAAGCACGTCGTCAGGCTGATC
CGGCGAGCCAAGGAGGAGATACCGTTGCAGTTCAAGAACGCCGGCGGCGGTGGCATGAACGGGAAACGCGTCAAGCAGCT
GGCCGGCGTGCTGTTCGGGTACAGCGCGTTCTACGTGGCGAGCTGGCGGAACATCGGGTTCGAGGCGCCGGACTTCGGCG
GCGGGCGGGCGGCGCGGGTGATGTGCCACTTCGAGCCGACGGGCGTGCCGAGCTGCGTGGCGTGCCTGCCGCGCGACGGC
GGCGGCGCCAGCGTTCTGTCGCTCTGCGTCAGGGACGAGCACGTCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25987.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis