Browse Element(s) Details


OsAffx.13734.1.S1_at

Description tigr:9632.m00825
TID=OsAffx.13734.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g095609/11CXC domain containing TSO1-like protein 1, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g09530Os.24765.1.A1_at3/114+5092099..5093612pentatricopeptide, putative, expressed
LOC_Os04g09540OsAffx.3755.1.S1_at11/114+5101123..5105179Phospholipase/Carboxylesterase family protein, expressed
LOC_Os04g09550OsAffx.25942.1.S1_at10/114+5108105..5109814expressed protein
LOC_Os04g09560OsAffx.13734.1.S1_at9/114+5110836..5112563CXC domain containing TSO1-like protein 1, putative
LOC_Os04g09580Os.50349.1.S2_at11/114+5115237..5122121expressed protein
LOC_Os04g09580Os.50349.1.S1_at11/114+5115237..5122121expressed protein
LOC_Os04g09580Os.33361.1.S1_at4/114+5115237..5122121expressed protein
LOC_Os04g09580Os.52162.1.S1_x_at3/114+5115237..5122121expressed protein
LOC_Os04g09580Os.33361.1.S1_x_at3/114+5115237..5122121expressed protein
LOC_Os04g09580Os.52176.1.S1_at1/114+5115237..5122121expressed protein
LOC_Os04g09570Os.50349.2.S1_at11/114+5115602..5116322expressed protein
LOC_Os04g09590OsAffx.25987.2.S1_at11/114+5132099..5133394Transferase family protein

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Gene Ontology Classification
GO idTypeName
GO:0009934biological_processregulation of meristem organization
GO:0045449biological_processregulation of transcription
GO:0005634cellular_componentnucleus
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13734.1.S1_at--1160--3231NONE
CAAGCCACACGAATCAAGCTGTTGA
NONE
OsAffx.13734.1.S1_at--486--6231Chr04:5111385..5111406 (22 bp)
GATGGCTAATCTCTGCTCGAAGCAT
LOC_Os04g09560
OsAffx.13734.1.S1_at--198--2391Chr04:5111357..5111381 (25 bp)
AAACGATCAGCATCGGTCATGCCGT
LOC_Os04g09560
OsAffx.13734.1.S1_at--769--591Chr04:5111339..5111363 (25 bp)
ATGCCGTTGCGTCAAGTCGAACTGT
LOC_Os04g09560
OsAffx.13734.1.S1_at--231--2571Chr04:5111212..5111344 (25 bp)
AACTGTGTCAAGCTCTATTGCCCGT
LOC_Os04g09560
OsAffx.13734.1.S1_at--429--10231Chr04:5111197..5111221 (25 bp)
TATTGCCCGTGTTTCAGCGCGTACG
LOC_Os04g09560
OsAffx.13734.1.S1_at--549--4571Chr04:5111181..5111205 (25 bp)
GCGCGTACGGCTATTGTTCACAGAA
LOC_Os04g09560
OsAffx.13734.1.S1_at--920--6751Chr04:5111166..5111190 (25 bp)
GTTCACAGAACTGCCGTTGCACTAA
LOC_Os04g09560
OsAffx.13734.1.S1_at--184--2271Chr04:5111078..5111102 (25 bp)
AAATCCGAGAGCATTTGATCCCAAG
LOC_Os04g09560
OsAffx.13734.1.S1_at--150--1111Chr04:5111032..5111056 (25 bp)
AGTGAGATTGAACCCCAGAGCTCTA
LOC_Os04g09560
OsAffx.13734.1.S1_at--875--4171NONE
CCCAGAGCTCTAATGCAGTGCCGAT
NONE
Target Sequence 
CAAGCCACACGAATCAAGCTGTTGATATGAAGGTCCTTAGATGGCTAATCTCTGCTCGAAGCATGTCAAACGATCAGCAT
CGGTCATGCCGTTGCGTCAAGTCGAACTGTGTCAAGCTCTATTGCCCGTGTTTCAGCGCGTACGGCTATTGTTCACAGAA
CTGCCGTTGCACTAACTGTAAGAACAGAGAGTACTATGAGGACTTTGTGGAGGAGCGTGTGGACATGATCAAGATGAAAA
ATCCGAGAGCATTTGATCCCAAGATTGTTAGGGTTCAAGATGCAAGTGAGATTGAACCCCAGAGCTCTAATGCAGTGCCG
AT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13734.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis