Browse Element(s) Details


Os.24765.1.A1_at

Description gb:CA762569
DB_XREF= gi:25806608
DB_XREF=BR060009A20B02.ab1
CLONE=BR060009A20B02.ab1
TID=Os.24765.1
CNT=6
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.24765 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_565377.1 (A.thaliana) Expressed protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g095303/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g09500OsAffx.13733.1.S1_at11/114+5068557..5069099hypothetical protein
LOC_Os04g09510OsAffx.25940.1.S1_at11/114+5070425..5072204hypothetical protein
LOC_Os04g09510OsAffx.22250.2.S1_x_at1/114+5070425..5072204hypothetical protein
LOC_Os04g09510OsAffx.20947.1.S1_x_at1/114+5070425..5072204hypothetical protein
LOC_Os04g09510OsAffx.9652.1.S1_x_at1/114+5070425..5072204hypothetical protein
LOC_Os04g09510OsAffx.18381.1.S1_at1/114+5070425..5072204hypothetical protein
LOC_Os04g09520OsAffx.25941.1.S1_at11/114+5075638..5078657Protease inhibitor/seed storage/LTP family protein
LOC_Os04g09520Os.34818.1.S1_at1/114+5075638..5078657Protease inhibitor/seed storage/LTP family protein
LOC_Os04g09530Os.24765.1.A1_at3/114+5092099..5093612pentatricopeptide, putative, expressed
LOC_Os04g09540OsAffx.3755.1.S1_at11/114+5101123..5105179Phospholipase/Carboxylesterase family protein, expressed
LOC_Os04g09550OsAffx.25942.1.S1_at10/114+5108105..5109814expressed protein
LOC_Os04g09560OsAffx.13734.1.S1_at9/114+5110836..5112563CXC domain containing TSO1-like protein 1, putative
LOC_Os04g09580Os.50349.1.S2_at11/114+5115237..5122121expressed protein
LOC_Os04g09580Os.50349.1.S1_at11/114+5115237..5122121expressed protein
LOC_Os04g09580Os.33361.1.S1_at4/114+5115237..5122121expressed protein
LOC_Os04g09580Os.52162.1.S1_x_at3/114+5115237..5122121expressed protein
LOC_Os04g09580Os.33361.1.S1_x_at3/114+5115237..5122121expressed protein
LOC_Os04g09580Os.52176.1.S1_at1/114+5115237..5122121expressed protein
LOC_Os04g09570Os.50349.2.S1_at11/114+5115602..5116322expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006464biological_processprotein modification
GO:0017118molecular_functionlipoyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24765.1.A1_at--216--10111Chr04:5092260..5092284 (25 bp)
TATGGTTTGATTAGCACCCCAGCAA
LOC_Os04g09530
Os.24765.1.A1_at--1031--8051Chr04:5092197..5092221 (25 bp)
GGAGACTGCCACAATGCTATCAAGA
LOC_Os04g09530
Os.24765.1.A1_at--1017--2771Chr04:5092138..5092162 (25 bp)
AAGAGATAATAAGCGCTTCCACCAT
LOC_Os04g09530
Os.24765.1.A1_at--981--2491Chr04:5092075..5092099 (25 bp)
AACATGGCTTTTGTTCAGCTGAATA
NONE
Os.24765.1.A1_at--385--311Chr04:5092031..5092055 (25 bp)
ATACGATGTATTGAGCACTTCTTTT
NONE
Os.24765.1.A1_at--265--7931Chr04:5091994..5092018 (25 bp)
GGATTGCAGCCATCCTATATGAATA
NONE
Os.24765.1.A1_at--1080--231Chr04:5091972..5091996 (25 bp)
ATATATGCTGGCAGCCATGCTTTTA
NONE
Os.24765.1.A1_at--273--6251Chr04:5091922..5091946 (25 bp)
GATGGTAGTGTTAGTACTCCTGTTA
NONE
Os.24765.1.A1_at--673--9911Chr04:5091908..5091932 (25 bp)
TACTCCTGTTATCCATCTCATTATG
NONE
Os.24765.1.A1_at--653--6331Chr04:5091866..5091890 (25 bp)
GATGCTTTTATTCTTGATGGCCTAT
NONE
Os.24765.1.A1_at--257--6031Chr04:5091759..5091783 (25 bp)
GAGAGGTTTCCTGCAATTTCATAAA
NONE
Target Sequence 
TATGGTTTGATTAGCACCCCAGCAAGGACTCCNCTTCGCATCATTAAGAACCTCAGGATCTGTGGAGACTGCCACAATGC
TATCAAGATCATGTCGAGGATTGTAGGGAGAGAGCTTATCGTAAGAGATAATAAGCGCTTCCACCATTTCAAGGATGGGA
AGTGCTCTTGTGGTGATTATTGGTGAACATGGCTTTTGTTCAGCTGAATACAATGGTCTGAAATTGCCAATACGATGTAT
TGAGCACTTCTTTTTTCTTATTATTAGGATTGCAGCCATCCTATATGAATATATGCTGGCAGCCATGCTTTTAGCNCATA
AACAATATCCAGTTATCTGATGGTAGTGTTAGTACTCCTGTTATCCATCTCATTATGATCATGAAGATGAATGTGATGCT
TTTATTCTTGATGGCCTATTTTTTTTCAGAGCTCTTGATGAGGTATCTTACTAACATGTTAGTCCTATTCTGGGGAAATG
TTTACATTGCATTGATGATAAGAGAGGTTTCCTGCAATTTCATAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24765.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis