Browse Element(s) Details


Os.33361.1.S1_at

Description gb:AK100848.1
DB_XREF= gi:32986057
TID=Os.33361.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.33361 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023123H12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023123H12, full insert sequence.
FL= gb:AK100848.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g095804/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g09530Os.24765.1.A1_at3/114+5092099..5093612pentatricopeptide, putative, expressed
LOC_Os04g09540OsAffx.3755.1.S1_at11/114+5101123..5105179Phospholipase/Carboxylesterase family protein, expressed
LOC_Os04g09550OsAffx.25942.1.S1_at10/114+5108105..5109814expressed protein
LOC_Os04g09560OsAffx.13734.1.S1_at9/114+5110836..5112563CXC domain containing TSO1-like protein 1, putative
LOC_Os04g09580Os.50349.1.S2_at11/114+5115237..5122121expressed protein
LOC_Os04g09580Os.50349.1.S1_at11/114+5115237..5122121expressed protein
LOC_Os04g09580Os.33361.1.S1_at4/114+5115237..5122121expressed protein
LOC_Os04g09580Os.52162.1.S1_x_at3/114+5115237..5122121expressed protein
LOC_Os04g09580Os.33361.1.S1_x_at3/114+5115237..5122121expressed protein
LOC_Os04g09580Os.52176.1.S1_at1/114+5115237..5122121expressed protein
LOC_Os04g09570Os.50349.2.S1_at11/114+5115602..5116322expressed protein
LOC_Os04g09590OsAffx.25987.2.S1_at11/114+5132099..5133394Transferase family protein
LOC_Os04g09604Os.26569.1.S1_at9/114+5141927..5147482O-methyltransferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33361.1.S1_at--130--2891Chr08:8112677..8112701 (25 bp)
AAGGGTTTTATTGGAGCAACGCTGG
NONE
Os.33361.1.S1_at--1131--10491Chr08:8112360..8112384 (25 bp)
TTAATTGATTTATTCCATTACGAGC
NONE
Os.33361.1.S1_at--979--4071Chr08:8112216..8112364 (25 bp)
CGAGCTAAAGCCCACTGTTTGATAT
NONE
Os.33361.1.S1_at--765--5912Chr08:8112215..8112363 (25 bp)
GAGCTAAAGCCCACTGTTTGATATT
NONE
Os.33361.1.S1_at--585--4832Chr08:8112213..8112361 (25 bp)
GCTAAAGCCCACTGTTTGATATTGC
NONE
Os.33361.1.S1_at--1019--9832Chr08:8112211..8112359 (25 bp)
TAAAGCCCACTGTTTGATATTGCTT
NONE
Os.33361.1.S1_at--92--2372Chr08:8112210..8112358 (25 bp)
AAAGCCCACTGTTTGATATTGCTTT
NONE
Os.33361.1.S1_at--65--5271Chr08:8112149..8112173 (25 bp)
GAATGCCATTAGCTGAGGCAGATTC
NONE
Os.33361.1.S1_at--687--4431Chr08:8112145..8112169 (25 bp)
GCCATTAGCTGAGGCAGATTCAATA
NONE
Os.33361.1.S1_at--717--7851Chr08:8112006..8112030 (25 bp)
GGTAGCTTCCCACTTCTACTATCTC
NONE
Os.33361.1.S1_at--1004--6951Chr08:8112005..8112029 (25 bp)
GTAGCTTCCCACTTCTACTATCTCT
NONE
Target Sequence 
AAGGGTTTTATTGGAGCAACGCTGGGAATTGTACTTTTATTGGATCAATAATGATTGGAAAGGATTTTATCGGAGAAATC
TTGATTAGGAAGGCATTCCCATGAGTTGCAAATCCAAGGAAGTTAATAACACCACTTGTCTACAGTATTACAAGTTAATT
GATTTATTCCATTACGAGCTAAAGCCCACTGTTTGATATTGCTTTATCCCGCTGCTTTGCCATTAGAACCAACAAAAGGA
GGAATGCCATTAGCTGAGGCAGATTCAATACCAAAGTTGATTGTTTGATTCTAAACGTAATTATCATGGTTTCTTCTGGT
CCTTTAATGGTGATATTAAGATTTGGGCAAAATTAGTACAAGAGCTACATGTCCAAAATACCTTGGTAGCTTCCCACTTC
TACTATCTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33361.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis