Browse Element(s) Details


Os.50349.1.S1_at

Description gb:AK120827.1
DB_XREF= gi:37990450
TID=Os.50349.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50349 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-134-E09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023019E13, full insert sequence.
FL= gb:AK120827.1 gb:AK121287.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0958011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g09530Os.24765.1.A1_at3/114+5092099..5093612pentatricopeptide, putative, expressed
LOC_Os04g09540OsAffx.3755.1.S1_at11/114+5101123..5105179Phospholipase/Carboxylesterase family protein, expressed
LOC_Os04g09550OsAffx.25942.1.S1_at10/114+5108105..5109814expressed protein
LOC_Os04g09560OsAffx.13734.1.S1_at9/114+5110836..5112563CXC domain containing TSO1-like protein 1, putative
LOC_Os04g09580Os.50349.1.S2_at11/114+5115237..5122121expressed protein
LOC_Os04g09580Os.50349.1.S1_at11/114+5115237..5122121expressed protein
LOC_Os04g09580Os.33361.1.S1_at4/114+5115237..5122121expressed protein
LOC_Os04g09580Os.52162.1.S1_x_at3/114+5115237..5122121expressed protein
LOC_Os04g09580Os.33361.1.S1_x_at3/114+5115237..5122121expressed protein
LOC_Os04g09580Os.52176.1.S1_at1/114+5115237..5122121expressed protein
LOC_Os04g09570Os.50349.2.S1_at11/114+5115602..5116322expressed protein
LOC_Os04g09590OsAffx.25987.2.S1_at11/114+5132099..5133394Transferase family protein
LOC_Os04g09604Os.26569.1.S1_at9/114+5141927..5147482O-methyltransferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50349.1.S1_at--115--8111Chr04:5116978..5117002 (25 bp)
GGACTGACTAATTTTTTACGTGAGG
LOC_Os04g09580
Os.50349.1.S1_at--265--5351Chr04:5116954..5116978 (25 bp)
GAAGTTGCAGTAGGCGAGTAGCTAT
LOC_Os04g09580
Os.50349.1.S1_at--1009--2811Chr04:5116899..5116923 (25 bp)
AAGTTGTTCGACATTTTACATGGTA
LOC_Os04g09580
Os.50349.1.S1_at--783--2011Chr04:5116724..5116748 (25 bp)
ACTACAGTACCATACATCATCGAGA
LOC_Os04g09580
Os.50349.1.S1_at--127--10111Chr04:5116674..5116698 (25 bp)
TAGGCCACCTTATTATTCGATTCTC
LOC_Os04g09580
Os.50349.1.S1_at--652--10611Chr04:5116659..5116683 (25 bp)
TTCGATTCTCCGGTGGATGAGCATG
LOC_Os04g09580
Os.50349.1.S1_at--1047--7951Chr04:5116635..5116659 (25 bp)
GGATCACTCGGTGGCTCTAGTAGAC
LOC_Os04g09580
Os.50349.1.S1_at--344--1171Chr04:5116561..5116585 (25 bp)
AGTCAGCCAGTGGATACCGGCAAGT
LOC_Os04g09580
Os.50349.1.S1_at--165--5771Chr04:5116536..5116560 (25 bp)
GACGTAATGACGTGCGTGTGCTCGT
LOC_Os04g09580
Os.50349.1.S1_at--210--4671Chr04:5116523..5116547 (25 bp)
GCGTGTGCTCGTCGCAAGAAATAAC
LOC_Os04g09580
Os.50349.1.S1_at--849--9911Chr04:5116475..5116499 (25 bp)
TACTGATTTTGAACGCTTGACTAAG
LOC_Os04g09580
Target Sequence 
GGACTGACTAATTTTTTACGTGAGGAAGTTGCAGTAGGCGAGTAGCTATTAGAAGTAATTGCTTCGTTTTTAACGTATAA
AGTTGTTCGACATTTTACATGGTATTTTACTATTTGTTGTATTCAGAAAAATTATATAAATAGCTTTTTTTAAGTATGAC
ATATATTGTATCATATTTACAATATTTTTGTAATAAAAAATATGTTCAAACGTTATTTAAAAGTTTATGGAATTATCTAT
GTAAGAACGTTAATACTACAGTACCATACATCATCGAGAAATGTATATTATACTTACTAGTTACTAGGCCACCTTATTAT
TCGATTCTCCGGTGGATGAGCATGGATCACTCGGTGGCTCTAGTAGACAAAGTTACCTAAAATGAAATTTCAAATTCTAA
GTTTACTTGGTTAAATCAGTCAGCCAGTGGATACCGGCAAGTGACGTAATGACGTGCGTGTGCTCGTCGCAAGAAATAAC
TAAGCTTACGAACTTAATATATATACTGATTTTGAACGCTTGACTAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50349.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis