Browse Element(s) Details


OsAffx.25942.1.S1_at

Description tigr:9632.m00824
TID=OsAffx.25942.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0955010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g09530Os.24765.1.A1_at3/114+5092099..5093612pentatricopeptide, putative, expressed
LOC_Os04g09540OsAffx.3755.1.S1_at11/114+5101123..5105179Phospholipase/Carboxylesterase family protein, expressed
LOC_Os04g09550OsAffx.25942.1.S1_at10/114+5108105..5109814expressed protein
LOC_Os04g09560OsAffx.13734.1.S1_at9/114+5110836..5112563CXC domain containing TSO1-like protein 1, putative
LOC_Os04g09580Os.50349.1.S2_at11/114+5115237..5122121expressed protein
LOC_Os04g09580Os.50349.1.S1_at11/114+5115237..5122121expressed protein
LOC_Os04g09580Os.33361.1.S1_at4/114+5115237..5122121expressed protein
LOC_Os04g09580Os.52162.1.S1_x_at3/114+5115237..5122121expressed protein
LOC_Os04g09580Os.33361.1.S1_x_at3/114+5115237..5122121expressed protein
LOC_Os04g09580Os.52176.1.S1_at1/114+5115237..5122121expressed protein
LOC_Os04g09570Os.50349.2.S1_at11/114+5115602..5116322expressed protein
LOC_Os04g09590OsAffx.25987.2.S1_at11/114+5132099..5133394Transferase family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25942.1.S1_at--902--4531Chr04:5108150..5108174 (25 bp)
GCCCGCTTGGAAGGCACAGAAGGAT
LOC_Os04g09550
OsAffx.25942.1.S1_at--831--6231Chr04:5108917..5108941 (25 bp)
GATGGAGAGCTCACACATTGGCTGC
LOC_Os04g09550
OsAffx.25942.1.S1_at--366--9191Chr04:5108951..5108975 (25 bp)
TGCCTCCCTGCATATCTTACAATGT
LOC_Os04g09550
OsAffx.25942.1.S1_at--308--1311NONE
AGAGGTGGGAACTGTCTTCGTAGTT
NONE
OsAffx.25942.1.S1_at--90--7151Chr04:5109401..5109425 (25 bp)
GTCTTCGTAGTTCTTGATCAAGCGC
LOC_Os04g09550
OsAffx.25942.1.S1_at--953--9711Chr04:5109418..5109442 (25 bp)
TCAAGCGCAAGGTCAACTGAACCCA
LOC_Os04g09550
OsAffx.25942.1.S1_at--988--9651Chr04:5109495..5109519 (25 bp)
TCACCGATCACCGTGCTTTAAGATT
LOC_Os04g09550
OsAffx.25942.1.S1_at--527--3211Chr04:5109526..5109550 (25 bp)
CAAGGGATACTCAAACCTGTTTGTA
LOC_Os04g09550
OsAffx.25942.1.S1_at--588--2711Chr04:5109600..5109624 (25 bp)
AAGCATCACGATCTGCGAGAGATAT
LOC_Os04g09550
OsAffx.25942.1.S1_at--993--5931Chr04:5109637..5109661 (25 bp)
GAGCAGATCATCAGTGTTTCCTTTG
LOC_Os04g09550
OsAffx.25942.1.S1_at--243--171Chr04:5109750..5109774 (25 bp)
ATTTTGGGCGTTTGTTTGGATTCAG
LOC_Os04g09550
Target Sequence 
GCCCGCTTGGAAGGCACAGAAGGATTATCTTGTTATTGTTTGAGAGGAAAGGATCCTGAGGAGCAAGATGGAGAGCTCAC
ACATTGGCTGCAAGAAGAGCTGCCTCCCTGCATATCTTACAATGTCATGGAAGAGGTGGGAACTGTCTTCGTAGTTCTTG
ATCAAGCGCAAGGTCAACTGAACCCACTGAGACTACCAAATGGACGACAAGATTTGAAGTATCATGGAGTTCAAGGCCTC
ACCGATCACCGTGCTTTAAGATTTCGTTACAAGGGATACTCAAACCTGTTTGTATTTACAGTTGCATTTTTGGAAGAAAG
TGGCTATTGTCTTGAGGATGGTAAAGCATCACGATCTGCGAGAGATATCACTGCATAAAAGAGCAGATCATCAGTGTTTC
CTTTGAAAATTTCCAACACTTTGAAATTACATTTACATTCTACACTGGTAAATTATGTTAACGAAGTGTGAAGGAGCCAA
AAACTTGCAAAATATTTTGGGCGTTTGTTTGGATTCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25942.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis