Browse Element(s) Details


Os.52162.1.S1_x_at

Description gb:AK065387.1
DB_XREF= gi:32975405
TID=Os.52162.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52162 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013021P08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013021P08, full insert sequence.
FL= gb:AK065387.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g095803/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g09530Os.24765.1.A1_at3/114+5092099..5093612pentatricopeptide, putative, expressed
LOC_Os04g09540OsAffx.3755.1.S1_at11/114+5101123..5105179Phospholipase/Carboxylesterase family protein, expressed
LOC_Os04g09550OsAffx.25942.1.S1_at10/114+5108105..5109814expressed protein
LOC_Os04g09560OsAffx.13734.1.S1_at9/114+5110836..5112563CXC domain containing TSO1-like protein 1, putative
LOC_Os04g09580Os.50349.1.S2_at11/114+5115237..5122121expressed protein
LOC_Os04g09580Os.50349.1.S1_at11/114+5115237..5122121expressed protein
LOC_Os04g09580Os.33361.1.S1_at4/114+5115237..5122121expressed protein
LOC_Os04g09580Os.52162.1.S1_x_at3/114+5115237..5122121expressed protein
LOC_Os04g09580Os.33361.1.S1_x_at3/114+5115237..5122121expressed protein
LOC_Os04g09580Os.52176.1.S1_at1/114+5115237..5122121expressed protein
LOC_Os04g09570Os.50349.2.S1_at11/114+5115602..5116322expressed protein
LOC_Os04g09590OsAffx.25987.2.S1_at11/114+5132099..5133394Transferase family protein
LOC_Os04g09604Os.26569.1.S1_at9/114+5141927..5147482O-methyltransferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52162.1.S1_x_at--605--8831Chr10:3637056..3637080 (25 bp)
TGATATTGCTTTATCCCACTGCTTT
NONE
Os.52162.1.S1_x_at--42--413Chr10:16197294..16197318 (25 bp)
ATCATGGTTTCTTGTGGTCCTTTAA
NONE
Os.52162.1.S1_x_at--446--4371Chr10:3637261..3637285 (25 bp)
CCACTTCTATTATCTCTCCAATTTA
NONE
Os.52162.1.S1_x_at--487--10831Chr10:3637333..3637357 (25 bp)
TTGGACTCACCTACTCTTAAATTGT
NONE
Os.52162.1.S1_x_at--520--1214Chr10:16197451..16197475 (25 bp)
AGTTATTTTGGACTCACCTCTTCAA
NONE
Os.52162.1.S1_x_at--615--1753Chr10:16197466..16197490 (25 bp)
ACCTCTTCAAAGTACCTGTCATCTG
NONE
Os.52162.1.S1_x_at--830--7072Chr10:3637435..3637459 (25 bp)
GTAATTTCTAAATCTCAGCTCTGCT
NONE
Os.52162.1.S1_x_at--1065--7093Chr10:16197565..16197589 (25 bp)
GTCACTAGAATTCCTGCTGCATACG
NONE
Os.52162.1.S1_x_at--567--1971Chr10:3637579..3637603 (25 bp)
ACTGATCAGCTCAATGTAACACTTG
NONE
Os.52162.1.S1_x_at--227--5491Chr10:3637612..3637636 (25 bp)
GAGAGTTTTCGTTTACTCCAGGACA
NONE
Os.52162.1.S1_x_at--495--6811Chr10:3637622..3637646 (25 bp)
GTTTACTCCAGGACACCTGACAGTT
NONE
Target Sequence 
TGATATTGCTTTATCCCACTGCTTTTCCATTAGAACCAACAAAAGGAGAAATTCCTTTAGCTGAAGTCCTCAGATTCAAT
ACCAAAGTTGATTGTTTGATTCTAAACGTAATTATCATGGTTTCTTGTGGTCCTTTAATGGTGATATTAAGACTTGGGCA
AAATTGGTACAAAAGCTACATGTCCAAAATACCTTGGTAGCTTCCCCACTTCTATTATCTCTCCAATTTACTCTTAAATT
GTATGATACAATATTATCAAGTTTCATAGTAGTTATTTTGGACTCACCTACTCTTAAATTGTATGATACAACATTATCAA
GTTTCATATTAGTTATTTTGGACTCACCTCTTCAAAGTACCTGTCATCTGGGTTGGGAGGTAATTTCTAAATCTCAGCTC
TGCTATTTGATGATCTGACATTCATATTTTACTACATACTTCTTGTCACTAGAATTCCTGCTGCATACGTACTAGCTAGG
TATTTCCTCTTACAATAATGGTTGTCAGAATTGGCAGCATGAAACTGATCAGCTCAATGTAACACTTGAACAATCTGAGA
GTTTTCGTTTACTCCAGGACACCTGACAGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52162.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis