Browse Element(s) Details


OsAffx.3755.1.S1_at

Description tigr:9632.m00823
TID=OsAffx.3755.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=PhospholipaseCarboxylesterase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0954011/11Phospholipase/Carboxylesterase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g09520OsAffx.25941.1.S1_at11/114+5075638..5078657Protease inhibitor/seed storage/LTP family protein
LOC_Os04g09520Os.34818.1.S1_at1/114+5075638..5078657Protease inhibitor/seed storage/LTP family protein
LOC_Os04g09530Os.24765.1.A1_at3/114+5092099..5093612pentatricopeptide, putative, expressed
LOC_Os04g09540OsAffx.3755.1.S1_at11/114+5101123..5105179Phospholipase/Carboxylesterase family protein, expressed
LOC_Os04g09550OsAffx.25942.1.S1_at10/114+5108105..5109814expressed protein
LOC_Os04g09560OsAffx.13734.1.S1_at9/114+5110836..5112563CXC domain containing TSO1-like protein 1, putative
LOC_Os04g09580Os.50349.1.S2_at11/114+5115237..5122121expressed protein
LOC_Os04g09580Os.50349.1.S1_at11/114+5115237..5122121expressed protein
LOC_Os04g09580Os.33361.1.S1_at4/114+5115237..5122121expressed protein
LOC_Os04g09580Os.52162.1.S1_x_at3/114+5115237..5122121expressed protein
LOC_Os04g09580Os.33361.1.S1_x_at3/114+5115237..5122121expressed protein
LOC_Os04g09580Os.52176.1.S1_at1/114+5115237..5122121expressed protein
LOC_Os04g09570Os.50349.2.S1_at11/114+5115602..5116322expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016789molecular_functioncarboxylic ester hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3755.1.S1_at--943--3411Chr04:5103220..5103457 (25 bp)
CAGAGCCACCTGACGTGAAGCTTGG
LOC_Os04g09540
OsAffx.3755.1.S1_at--217--3671Chr04:5103509..5103533 (25 bp)
CTACGCTCACGGCAAATTCGCGAAT
LOC_Os04g09540
OsAffx.3755.1.S1_at--755--91Chr04:5103524..5103548 (25 bp)
ATTCGCGAATAGCATGCCATATCCA
LOC_Os04g09540
OsAffx.3755.1.S1_at--387--591Chr04:5103537..5103561 (25 bp)
ATGCCATATCCAATCACACTCAGTG
LOC_Os04g09540
OsAffx.3755.1.S1_at--1161--2171Chr04:5103552..5103576 (25 bp)
ACACTCAGTGCGGTCATCAGCTTGA
LOC_Os04g09540
OsAffx.3755.1.S1_at--658--1391Chr04:5103697..5103721 (25 bp)
AGACGGAGAGCTCACACATGGCTGC
LOC_Os04g09540
OsAffx.3755.1.S1_at--274--3811Chr04:5103734..5103758 (25 bp)
CTCCTTGCCTATCTTACTAAGTCAT
LOC_Os04g09540
OsAffx.3755.1.S1_at--218--6151Chr04:5104576..5104599 (24 bp)
GAGGTGCAACGTCAACTGAACCCAC
LOC_Os04g09540
OsAffx.3755.1.S1_at--506--1031Chr04:5104647..5104671 (25 bp)
AGGTCTTACCATGCTTTGAGATTTC
LOC_Os04g09540
OsAffx.3755.1.S1_at--915--9611Chr04:5104688..5104712 (25 bp)
TCATGGAGTATGAAGGCCTTACCGT
LOC_Os04g09540
OsAffx.3755.1.S1_at--641--8431Chr04:5104702..5104726 (25 bp)
GGCCTTACCGTGCTTTGAGATTTTG
LOC_Os04g09540
Target Sequence 
CAGAGCCACCTGACGTGAAGCTTGGGATCGGCGGTTTCAGCATGGGTGCAGCTGCTGCCCTCCACTCCGCAGCGTGCTAC
GCTCACGGCAAATTCGCGAATAGCATGCCATATCCAATCACACTCAGTGCGGTCATCAGCTTGAGTGGCTGGCTCCCTTG
CTCCAGGACCCTGAGGAGCAAGACGGAGAGCTCACACATGGCTGCAAGAAGAGCTTCCTCCTTGCCTATCTTACTAAGTC
ATGGAAGAGGTGCAACGTCAACTGAACCCACTGAGACTATCGAGTGGGTGACAAGGTTTGAAGGGCCATGGAGTATGAAG
GTCTTACCATGCTTTGAGATTTCGCAAAGGTTTGAAGGGTCATGGAGTATGAAGGCCTTACCGTGCTTTGAGATTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3755.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis