Browse Element(s) Details


Os.52842.1.S1_at

Description gb:AK069554.1
DB_XREF= gi:32979578
TID=Os.52842.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52842 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023022D15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023022D15, full insert sequence.
FL= gb:AK069554.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3249010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g32440OsAffx.19121.1.S1_at11/1111+18651732..18652366hypothetical protein
LOC_Os11g32450NANA11+18657056..18657904hypothetical protein
LOC_Os11g32460OsAffx.19122.1.S1_at11/1111+18660731..18661538hypothetical protein
LOC_Os11g32470Os.10277.1.S1_at1/1111+18664509..18670723expressed protein
LOC_Os11g32470Os.34337.1.S1_at1/1111+18664509..18670723expressed protein
LOC_Os11g32480Os.17896.1.S1_at10/1111+18671390..18673443TPR repeat region family protein, expressed
LOC_Os11g32490Os.52842.1.S1_at10/1111+18673682..18678222expressed protein
LOC_Os11g32500Os.14791.1.S1_at11/1111+18679054..18680852Rubredoxin family protein, expressed
LOC_Os11g32510OsAffx.19123.1.S1_at11/1111+18682831..18683671GH3 auxin-responsive promoter family protein
LOC_Os11g32520OsAffx.31270.1.S1_at11/1111+18687059..18688619indole-3-acetic acid-amido synthetase GH3.1, putative
LOC_Os11g32530OsAffx.31271.1.S1_at10/1111+18696086..18699078hypothetical protein
LOC_Os11g32530OsAffx.17134.1.S1_at1/1111+18696086..18699078hypothetical protein
LOC_Os11g32530Os.21854.1.S1_at1/1111+18696086..18699078hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52842.1.S1_at--169--6151Chr11:18674764..18674788 (25 bp)
GAGGTCATTGTTTCTTACTATATTT
LOC_Os11g32490
Os.52842.1.S1_at--239--5551Chr11:18674360..18674751 (25 bp)
GAAAGGCAACTGTACAAGATCTCGA
LOC_Os11g32490
Os.52842.1.S1_at--281--2811NONE
AAGATCTCGATTTACGCTGCGAACA
NONE
Os.52842.1.S1_at--3--4791Chr11:18674330..18674354 (25 bp)
GCTGCGAACAGCTCATCAAGGAAGA
LOC_Os11g32490
Os.52842.1.S1_at--136--10771Chr11:18674285..18674309 (25 bp)
TTGACGTTGTTGATGCTGTGAAGAA
LOC_Os11g32490
Os.52842.1.S1_at--951--10791Chr11:18674019..18674267 (25 bp)
TTGTATCTCGGGATTCAATCGGGAG
LOC_Os11g32490
Os.52842.1.S1_at--805--1571Chr11:18673925..18673949 (25 bp)
AGCTCAACAAGCTTCAACCGGTTCA
LOC_Os11g32490
Os.52842.1.S1_at--1157--9691Chr11:18673912..18673936 (25 bp)
TCAACCGGTTCATAGATTCTGCATA
LOC_Os11g32490
Os.52842.1.S1_at--418--5331Chr11:18673882..18673906 (25 bp)
GAAGTGATCTTCGTTTCTTTATATG
LOC_Os11g32490
Os.52842.1.S1_at--303--10591Chr11:18673815..18673839 (25 bp)
TTCTCTGTGCAGTTCTGTGATGTAC
LOC_Os11g32490
Os.52842.1.S1_at--629--4331Chr11:18673771..18673795 (25 bp)
CCATCTTATTATTTCGTTCTTTCAT
LOC_Os11g32490
Target Sequence 
GAGGTCATTGTTTCTTACTATATTTTGATGGAGCAAGGAAAGGCAACTGTACAAGATCTCGATTTACGCTGCGAACAGCT
CATCAAGGAAGAATTTGGTGTGGAGTGCAATTTTGACGTTGTTGATGCTGTGAAGAAGCTAGAAAAGCTTGGAATTGTAT
CTCGGGATTCAATCGGGAGAATTGTATGTGTTCCATTGAAGCGTGCAAATGACATTATAGGGCAAACTACTGAAGAAATG
GTGATGCGAGCTCAACAAGCTTCAACCGGTTCATAGATTCTGCATACTGTTGAAGTGATCTTCGTTTCTTTATATGAAGA
TGAAATTAATTGTGATATTCTCAAACGATAGTTTTTTTTTCTCTGTGCAGTTCTGTGATGTACGATAATGTCAAAAATAA
TTCCATCTTATTATTTCGTTCTTTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52842.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis