Browse Element(s) Details


Os.17896.1.S1_at

Description gb:AK072911.1
DB_XREF= gi:32982934
TID=Os.17896.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.17896 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023150D09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023150D09, full insert sequence.
FL= gb:AK072911.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3248010/11TPR repeat region family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g32430OsAffx.31269.1.S1_at11/1111+18646412..18648222hypothetical protein
LOC_Os11g32440OsAffx.19121.1.S1_at11/1111+18651732..18652366hypothetical protein
LOC_Os11g32450NANA11+18657056..18657904hypothetical protein
LOC_Os11g32460OsAffx.19122.1.S1_at11/1111+18660731..18661538hypothetical protein
LOC_Os11g32470Os.10277.1.S1_at1/1111+18664509..18670723expressed protein
LOC_Os11g32470Os.34337.1.S1_at1/1111+18664509..18670723expressed protein
LOC_Os11g32480Os.17896.1.S1_at10/1111+18671390..18673443TPR repeat region family protein, expressed
LOC_Os11g32490Os.52842.1.S1_at10/1111+18673682..18678222expressed protein
LOC_Os11g32500Os.14791.1.S1_at11/1111+18679054..18680852Rubredoxin family protein, expressed
LOC_Os11g32510OsAffx.19123.1.S1_at11/1111+18682831..18683671GH3 auxin-responsive promoter family protein
LOC_Os11g32520OsAffx.31270.1.S1_at11/1111+18687059..18688619indole-3-acetic acid-amido synthetase GH3.1, putative
LOC_Os11g32530OsAffx.31271.1.S1_at10/1111+18696086..18699078hypothetical protein
LOC_Os11g32530OsAffx.17134.1.S1_at1/1111+18696086..18699078hypothetical protein
LOC_Os11g32530Os.21854.1.S1_at1/1111+18696086..18699078hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17896.1.S1_at--732--9431Chr11:18671814..18671838 (25 bp)
TCGGGACCTGGGTCGAGCAGCACAT
LOC_Os11g32480
Os.17896.1.S1_at--457--9371NONE
TCGACCTCGAAAACCCAGATTTGTG
NONE
Os.17896.1.S1_at--937--10031Chr11:18672909..18672933 (25 bp)
TAGTCAGGAACAACCACCCGAGGCA
LOC_Os11g32480
Os.17896.1.S1_at--835--6191Chr11:18672928..18672952 (25 bp)
GAGGCAGTGAACTCTAATCCTGTAT
LOC_Os11g32480
Os.17896.1.S1_at--403--7831Chr11:18673060..18673084 (25 bp)
GGTCACGGACAACCTGAGCAAGCAC
LOC_Os11g32480
Os.17896.1.S1_at--836--2711Chr11:18673079..18673103 (25 bp)
AAGCACTCTTCTCCTGAGACCAGAT
LOC_Os11g32480
Os.17896.1.S1_at--983--1271Chr11:18673100..18673124 (25 bp)
AGATCAGCACCTGGTCAGCCATGGG
LOC_Os11g32480
Os.17896.1.S1_at--890--5271Chr11:18673197..18673221 (25 bp)
GAATGGTAGCGGTTTTATGCCTAAG
LOC_Os11g32480
Os.17896.1.S1_at--864--3031Chr11:18673225..18673249 (25 bp)
AATCCTGTTTTGTTGCCCCTATAGT
LOC_Os11g32480
Os.17896.1.S1_at--578--4531Chr11:18673239..18673263 (25 bp)
GCCCCTATAGTTTGGTGCTTGTGTA
LOC_Os11g32480
Os.17896.1.S1_at--395--3751Chr11:18673415..18673439 (25 bp)
CTCTTGTGTTTAGCATTTTCTCGTT
LOC_Os11g32480
Target Sequence 
TCGGGACCTGGGTCGAGCAGCACATCCACTCCATGGACGAGGCCAACATCCGCGCCCTGCTCCAAGTCCTCGACCTCGAA
AACCCAGATTTGTGGAAGTGGCTTACTAGTCAGGAACAACCACCCGAGGCAGTGAACTCTAATCCTGTATTTATCGCTGT
TAAATCGAAGGTCACGGACAACCTGAGCAAGCACTCTTCTCCTGAGACCAGATCAGCACCTGGTCAGCCATGGGTGAGAG
GGTGGGATGACAAGCGAGGCATTGAAGGACCAAAGTATGGAAATCAGTGATGAGATATGCTTCAGAGAATGGTAGCGGTT
TTATGCCTAAGTATAATCCTGTTTTGTTGCCCCTATAGTTTGGTGCTTGTGTAGAATAAATTAAATCATGGTATCCAATG
ATTTGGAAATTTGGAGTGTCACCATGAATTTGGATTGACAAATAATGCTCTGTACAAGTTTCAAACACTTTCTGGTTGAA
GACAAAGCAGTGTGGTGGTAACAACTTAACATGTAAATCAAAAGCTCTTGTGTTTAGCATTTTCTCGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17896.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis