Browse Element(s) Details


Os.14791.1.S1_at

Description gb:AK058434.1
DB_XREF= gi:32968452
TID=Os.14791.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.14791 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-015-F04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-015-F04, full insert sequence.
FL= gb:AK058434.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3250011/11Rubredoxin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g32450NANA11+18657056..18657904hypothetical protein
LOC_Os11g32460OsAffx.19122.1.S1_at11/1111+18660731..18661538hypothetical protein
LOC_Os11g32470Os.10277.1.S1_at1/1111+18664509..18670723expressed protein
LOC_Os11g32470Os.34337.1.S1_at1/1111+18664509..18670723expressed protein
LOC_Os11g32480Os.17896.1.S1_at10/1111+18671390..18673443TPR repeat region family protein, expressed
LOC_Os11g32490Os.52842.1.S1_at10/1111+18673682..18678222expressed protein
LOC_Os11g32500Os.14791.1.S1_at11/1111+18679054..18680852Rubredoxin family protein, expressed
LOC_Os11g32510OsAffx.19123.1.S1_at11/1111+18682831..18683671GH3 auxin-responsive promoter family protein
LOC_Os11g32520OsAffx.31270.1.S1_at11/1111+18687059..18688619indole-3-acetic acid-amido synthetase GH3.1, putative
LOC_Os11g32530OsAffx.31271.1.S1_at10/1111+18696086..18699078hypothetical protein
LOC_Os11g32530OsAffx.17134.1.S1_at1/1111+18696086..18699078hypothetical protein
LOC_Os11g32530Os.21854.1.S1_at1/1111+18696086..18699078hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0005489molecular_functionelectron transporter activity
GO:0046872molecular_functionmetal ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14791.1.S1_at--53--5731Chr11:18680279..18680430 (25 bp)
GACTGCGGGTACATCTACAGCGACA
LOC_Os11g32500
Os.14791.1.S1_at--1073--2211Chr11:18680242..18680266 (25 bp)
ACAAGCTTCCCGACAAGTACTTCTG
LOC_Os11g32500
Os.14791.1.S1_at--592--9151Chr11:18679785..18680243 (25 bp)
TGCCCCGTTTGTGGAGCACCAAAGA
LOC_Os11g32500
Os.14791.1.S1_at--653--7871Chr11:18679757..18679781 (25 bp)
GGTTCAAGCCGTACGAGCCTAAGGT
LOC_Os11g32500
Os.14791.1.S1_at--1096--531Chr11:18679416..18679440 (25 bp)
ATCGCCGTCGGGATACTTGCATTGG
LOC_Os11g32500
Os.14791.1.S1_at--977--8451Chr11:18679394..18679418 (25 bp)
TGGCCGGCTTGTTCTTCTACTTGAA
LOC_Os11g32500
Os.14791.1.S1_at--871--9171Chr11:18679290..18679314 (25 bp)
TGCCTTCTTTTCAAACGTGCTGTTA
LOC_Os11g32500
Os.14791.1.S1_at--1154--3991Chr11:18679275..18679299 (25 bp)
CGTGCTGTTATATGCTTCTAGGAAA
LOC_Os11g32500
Os.14791.1.S1_at--648--7711Chr11:18679203..18679227 (25 bp)
GGGTGAAGATATCCATCCCCTATAT
LOC_Os11g32500
Os.14791.1.S1_at--1073--2231Chr11:18679168..18679192 (25 bp)
AAATTGACTTCTCATTGTGCCGCAT
LOC_Os11g32500
Os.14791.1.S1_at--1123--2351Chr11:18679131..18679155 (25 bp)
AAAGCCTGTTTGATCATCCTACGAT
LOC_Os11g32500
Target Sequence 
GACTGCGGGTACATCTACAGCGACAGGACCCCCTTCGACAAGCTTCCCGACAAGTACTTCTGCCCCGTTTGTGGAGCACC
AAAGAGAAGGTTCAAGCCGTACGAGCCTAAGGTGGCCAAGAACGCCAACGCCACCGATGCCCGCAAGGCTAGGAAGGAGC
AGCTGAAAAAGGACGAAGCCGTCGGGCAAGCGTTGCCTATCGGTATCGCCGTCGGGATACTTGCATTGGCCGGCTTGTTC
TTCTACTTGAACAGTGTCTACTAGATGGAGAAACATACGAGATGATCGATCCACTGCANTGGGGNAAAAGCATCAAAGAG
TTTTAAATTTTGCCTTCTTTTCAAACGTGCTGTTATATGCTTCTAGGAAATCCATGGCAAGTTTCTGTATCTTAGAGAAG
AAACTACACTTTTTTAGGGGTGAAGATATCCATCCCCTATATTATTGACAACAAATTGACTTCTCATTGTGCCGCATCNT
CGGCAAATTAAAGCCTGTTTGATCATCCTACGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14791.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis