Browse Element(s) Details


OsAffx.31270.1.S1_at

Description tigr:9639.m02956
TID=OsAffx.31270.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to AY113067 At1g28130F3H9_19
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3252011/11indole-3-acetic acid-amido synthetase GH3.1, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g32470Os.10277.1.S1_at1/1111+18664509..18670723expressed protein
LOC_Os11g32470Os.34337.1.S1_at1/1111+18664509..18670723expressed protein
LOC_Os11g32480Os.17896.1.S1_at10/1111+18671390..18673443TPR repeat region family protein, expressed
LOC_Os11g32490Os.52842.1.S1_at10/1111+18673682..18678222expressed protein
LOC_Os11g32500Os.14791.1.S1_at11/1111+18679054..18680852Rubredoxin family protein, expressed
LOC_Os11g32510OsAffx.19123.1.S1_at11/1111+18682831..18683671GH3 auxin-responsive promoter family protein
LOC_Os11g32520OsAffx.31270.1.S1_at11/1111+18687059..18688619indole-3-acetic acid-amido synthetase GH3.1, putative
LOC_Os11g32530OsAffx.31271.1.S1_at10/1111+18696086..18699078hypothetical protein
LOC_Os11g32530OsAffx.17134.1.S1_at1/1111+18696086..18699078hypothetical protein
LOC_Os11g32530Os.21854.1.S1_at1/1111+18696086..18699078hypothetical protein
LOC_Os11g32540OsAffx.7276.1.S1_at11/1111+18706191..18706931Chalcone and stilbene synthases, N-terminal domain containing protein
LOC_Os11g32550OsAffx.19125.1.S1_at11/1111+18709736..18710336hypothetical protein
LOC_Os11g32560Os.46444.1.S1_x_at1/1111+18713542..18715781hypothetical protein
LOC_Os11g32560OsAffx.18868.5.S1_x_at1/1111+18713542..18715781hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009733biological_processresponse to auxin stimulus
GO:0009734biological_processauxin mediated signaling pathway
GO:0009826biological_processunidimensional cell growth
GO:0010252biological_processauxin homeostasis
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31270.1.S1_at--373--9531Chr11:18687636..18687660 (25 bp)
TCAAGTTCCTCGAGGGCCACTGGCG
LOC_Os11g32520
OsAffx.31270.1.S1_at--151--8351Chr11:18687444..18687468 (25 bp)
GGCTGTGGCCGCGGACCAAGTACAT
LOC_Os11g32520
OsAffx.31270.1.S1_at--201--3831Chr11:18687355..18687379 (25 bp)
CTGCCGCTGGTGTCGACGATGTACG
LOC_Os11g32520
OsAffx.31270.1.S1_at--629--8611Chr11:18687348..18687372 (25 bp)
TGGTGTCGACGATGTACGCGTCGTC
LOC_Os11g32520
OsAffx.31270.1.S1_at--53--7211Chr11:18687329..18687353 (25 bp)
GTCGTCGGAGTCCTACTTCGGCATC
LOC_Os11g32520
OsAffx.31270.1.S1_at--751--9091Chr11:18687261..18687285 (25 bp)
TGCTGCCCAACATGTGCTACTACGA
LOC_Os11g32520
OsAffx.31270.1.S1_at--535--9451Chr11:18687159..18687183 (25 bp)
TCGGCGCCTACTACGAGCTCGTCGT
LOC_Os11g32520
OsAffx.31270.1.S1_at--328--7111Chr11:18687136..18687160 (25 bp)
GTCACCACCTTCACAGGTGAGCGCG
LOC_Os11g32520
OsAffx.31270.1.S1_at--1139--1731Chr11:18687130..18687154 (25 bp)
ACCTTCACAGGTGAGCGCGTGTGCA
LOC_Os11g32520
OsAffx.31270.1.S1_at--687--5871Chr11:18687118..18687142 (25 bp)
GAGCGCGTGTGCAGCCCGTTCGATT
LOC_Os11g32520
OsAffx.31270.1.S1_at--569--8691Chr11:18687111..18687135 (25 bp)
TGTGCAGCCCGTTCGATTTCTTTCC
LOC_Os11g32520
Target Sequence 
TCAAGTTCCTCGAGGGCCACTGGCGCGCCCTCTGCGCCGACATCCGCGCCGGCCGCGCCGACCCGGCCGTCGTCACCGAC
GCCGCCTGCCGCGGCGCCGTCGACGCCCGTGTGGCGGCGCGTCCGTGGCGGGGCATCGTGCGGCGGCTGTGGCCGCGGAC
CAAGTACATCGACGTGATCGTGACGGGGTCCATGGCGCAGTACATCCCGCTGCTGGAGTTCTACGGCGGCGGGCTGCCGC
TGGTGTCGACGATGTACGCGTCGTCGGAGTCCTACTTCGGCATCAACCTCCGGCCGCTGGACCCGCCGGAGGAGGTGGTG
TACACGCTGCTGCCCAACATGTGCTACTACGAGTTCATCAAGGTGGAGAAGGACGGCGACGGCGAGAAGGTCCGCGACGG
CGAGGTGGTGGACCTCGTCGGCGTCGAGGTCGGCGCCTACTACGAGCTCGTCGTCACCACCTTCACAGGTGAGCGCGTGT
GCAGCCCGTTCGATTTCTTTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31270.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis