Browse Element(s) Details


Os.34337.1.S1_at

Description gb:AK071810.1
DB_XREF= gi:32981833
TID=Os.34337.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.34337 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023114H02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023114H02, full insert sequence.
FL= gb:AK071810.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g324701/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g32420Os.14919.1.S1_at7/1111+18636717..18642716transposon protein, putative, Mutator sub-class
LOC_Os11g32420Os.56216.1.S1_at2/1111+18636717..18642716transposon protein, putative, Mutator sub-class
LOC_Os11g32420OsAffx.29313.1.S1_at1/1111+18636717..18642716transposon protein, putative, Mutator sub-class
LOC_Os11g32430OsAffx.31269.1.S1_at11/1111+18646412..18648222hypothetical protein
LOC_Os11g32440OsAffx.19121.1.S1_at11/1111+18651732..18652366hypothetical protein
LOC_Os11g32450NANA11+18657056..18657904hypothetical protein
LOC_Os11g32460OsAffx.19122.1.S1_at11/1111+18660731..18661538hypothetical protein
LOC_Os11g32470Os.10277.1.S1_at1/1111+18664509..18670723expressed protein
LOC_Os11g32470Os.34337.1.S1_at1/1111+18664509..18670723expressed protein
LOC_Os11g32480Os.17896.1.S1_at10/1111+18671390..18673443TPR repeat region family protein, expressed
LOC_Os11g32490Os.52842.1.S1_at10/1111+18673682..18678222expressed protein
LOC_Os11g32500Os.14791.1.S1_at11/1111+18679054..18680852Rubredoxin family protein, expressed
LOC_Os11g32510OsAffx.19123.1.S1_at11/1111+18682831..18683671GH3 auxin-responsive promoter family protein
LOC_Os11g32520OsAffx.31270.1.S1_at11/1111+18687059..18688619indole-3-acetic acid-amido synthetase GH3.1, putative

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.34337.1.S1_at--1103--9911Chr11:18670602..18670626 (25 bp)
TACTGAACTCAGCTCGTACAGCACA
LOC_Os11g32470
Os.34337.1.S1_at--984--4952Chr11:18670720..18670744 (25 bp)
GCATAGATTCTTTTGTTGTCCAAGT
NONE
Os.34337.1.S1_at--601--5291Chr11:18670755..18670779 (25 bp)
GAATGGCAATGTTCTCCACGGAGCT
NONE
Os.34337.1.S1_at--980--3331Chr11:18670771..18670795 (25 bp)
CACGGAGCTGTCTGGTTCTGTTTGC
NONE
Os.34337.1.S1_at--719--7891Chr11:18670784..18670808 (25 bp)
GGTTCTGTTTGCTTCCTATATTAAT
NONE
Os.34337.1.S1_at--590--10851Chr11:18670862..18670886 (25 bp)
TTGGAGTGACTGATCTTCTGTTTGT
NONE
Os.34337.1.S1_at--165--10091Chr11:18670940..18670964 (25 bp)
TAGGATCTGCTTTCTGACTTGTGAG
NONE
Os.34337.1.S1_at--465--7391Chr11:18670960..18670984 (25 bp)
GTGAGGCTGTTCTTTGGTACTACAT
NONE
Os.34337.1.S1_at--95--1131Chr11:18671007..18671031 (25 bp)
AGTGCACGAGTTTCTTCAGGTCGCA
NONE
Os.34337.1.S1_at--782--5611Chr11:18671038..18671062 (25 bp)
GACACGGGATATTCTAAACTACCAT
NONE
Os.34337.1.S1_at--695--7151Chr11:18671086..18671110 (25 bp)
GTCTATGCAATTTTCCGCTTCAATG
NONE
Target Sequence 
TACTGAACTCAGCTCGTACAGCACATCACCTTGGGTCCTCAGAACCTGTGACCATACAGCATTTTGTGTCAGATACTTTC
TTATATAAGCCTCACCAGAACTGACATATGCTGAGTCTGCATAGATTCTTTTGTTGTCCAAGTGACTAATTCTGAATGGC
AATGTTCTCCACGGAGCTGTCTGGTTCTGTTTGCTTCCTATATTAATACCTTTTCAATGTACATTATATATGATAGGGTA
TATGCTGAGGTCTTGGAGAGTTGGAGTGACTGATCTTCTGTTTGTCAGTAATCAGTCAGTTTTTTCCCAAAAAAACTTTT
GATTTCATGAGATAGTTTTAGGATCTGCTTTCTGACTTGTGAGGCTGTTCTTTGGTACTACATGAAGATTTGCTTCGTAT
TCGGAAGTGCACGAGTTTCTTCAGGTCGCAGTGATAGACACGGGATATTCTAAACTACCATGTTTGATGTTTCATCAGAA
CATTGTCTATGCAATTTTCCGCTTCAATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.34337.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis