Browse Element(s) Details


Os.10344.1.S1_at

Description gb:AK121039.1
DB_XREF= gi:37990662
TID=Os.10344.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.10344 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023051G03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023051G03, full insert sequence.
FL= gb:AK121039.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3276010/11Sugar transporter family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g32720Os.47463.1.S1_x_at6/1112+19735362..19739064transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g32720Os.14491.2.S1_x_at4/1112+19735362..19739064transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g32730Os.46053.2.S1_x_at9/1112+19741136..19744310transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g32740NANA12+19745551..19748883transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g32750OsAffx.31989.1.S1_at11/1112+19750975..19758056expressed protein
LOC_Os12g32750Os.18223.1.S1_s_at11/1112+19750975..19758056expressed protein
LOC_Os12g32760Os.10344.1.S1_at10/1112+19759781..19762953Sugar transporter family protein, expressed
LOC_Os12g32770OsAffx.31309.1.S1_at6/1112+19763514..19765561expressed protein
LOC_Os12g32790Os.50920.1.A1_x_at11/1112+19777406..19781128NB-ARC domain containing protein, expressed
LOC_Os12g32790OsAffx.7771.1.S1_x_at8/1112+19777406..19781128NB-ARC domain containing protein, expressed
LOC_Os12g32800OsAffx.22145.1.S1_x_at1/1112+19785197..19796040retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0005886cellular_componentplasma membrane
GO:0016020cellular_componentmembrane
GO:0005351molecular_functionsugar porter activity
GO:0005354molecular_functiongalactose transporter activity
GO:0005355molecular_functionglucose transporter activity
GO:0005365molecular_functionmyo-inositol transporter activity
GO:0005403molecular_functionhydrogen:sugar symporter activity
GO:0015144molecular_functioncarbohydrate transporter activity
GO:0015145molecular_functionmonosaccharide transporter activity
GO:0015148molecular_functionD-xylose transporter activity
GO:0015168molecular_functionglycerol transporter activity
GO:0015575molecular_functionmannitol transporter activity
GO:0015591molecular_functionD-ribose transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10344.1.S1_at--719--6691Chr12:19760323..19760347 (25 bp)
GTTCGGGCCGGTGATATGGATGTAC
LOC_Os12g32760
Os.10344.1.S1_at--293--8911Chr12:19760210..19760234 (25 bp)
TGAGCTTCATCTCGCTGTACGAGGC
LOC_Os12g32760
Os.10344.1.S1_at--800--7571Chr12:19760182..19760206 (25 bp)
GGGCATGGCCGGCACGTTCTACCTC
LOC_Os12g32760
Os.10344.1.S1_at--733--7491Chr12:19760134..19760158 (25 bp)
GTGGGTGTTCGTCTACGCCTGCCTC
LOC_Os12g32760
Os.10344.1.S1_at--994--4031Chr12:19760002..19760026 (25 bp)
CGAGGTTTTGTGTGGTCGTCGCCCT
LOC_Os12g32760
Os.10344.1.S1_at--953--3911Chr12:19759956..19759980 (25 bp)
CGGCGTCGTCGTGATCGGGAAAAAG
LOC_Os12g32760
Os.10344.1.S1_at--963--171Chr12:19759835..19759859 (25 bp)
ATTTTTATGGCAAGGTCACCACCAA
LOC_Os12g32760
Os.10344.1.S1_at--497--2811Chr12:19759812..19759836 (25 bp)
AAGATCATCAGCCAATGTTTGTAAT
LOC_Os12g32760
Os.10344.1.S1_at--229--4391Chr12:19759801..19759825 (25 bp)
CCAATGTTTGTAATGCTCTCCATGA
LOC_Os12g32760
Os.10344.1.S1_at--556--7071Chr12:19759792..19759816 (25 bp)
GTAATGCTCTCCATGAAACGATAGG
LOC_Os12g32760
Os.10344.1.S1_at--597--8951Chr12:19759779..19759803 (25 bp)
TGAAACGATAGGGATTACAGTCCAA
NONE
Target Sequence 
GTTCGGGCCGGTGATATGGATGTACGGGTCGGAGATCCTGCCGCTGCGGCTGCGGGCGCAGGGCACGGGAATCGGGACGG
CGGCGAACCGGGTGATGAGCGCGGCGGTGGGGATGAGCTTCATCTCGCTGTACGAGGCGGCGGGCATGGCCGGCACGTTC
TACCTCTTCGCGGCGTGCTCCGCGGCGGCGTGGGTGTTCGTCTACGCCTGCCTCCCGGAGACCAAGGGGAGGAGCCTCGA
GGAGATGGAGGCGCTCTTNGACGCCGCCCACCCATCCTCGCCGCCGCCGGCGTCGTGATCGATCACGCGCGCGCGGGAAG
ACGAGGTTTTGTGTGGTCGTCGCCCTCCTCGCCGGCGACGGCGCCGCCGGCGTCGTCGTGATCGGGAAAAAGGTTGTAAA
ATGTGGGATAGGGTGTGGTAAATTGGTAATTAATTAAGGAATGCAGTAAGCAGGATGGGTAAATGTTAATTTGTTGGTGT
GTAATATAATTTTTATGGCAAGGTCACCACCAAGATCATCAGCCAATGTTTGTAATGCTCTCCATGAAACGATAGGGATT
ACAGTCCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10344.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis