Browse Element(s) Details


OsAffx.22145.1.S1_x_at

Description gb:NM_188275.1
DB_XREF= gi:34903633
GEN=B1046G12.24
TID=OsAffx.22145.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) B1046G12.24 (B1046G12.24), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g328001/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g32760Os.10344.1.S1_at10/1112+19759781..19762953Sugar transporter family protein, expressed
LOC_Os12g32770OsAffx.31309.1.S1_at6/1112+19763514..19765561expressed protein
LOC_Os12g32790Os.50920.1.A1_x_at11/1112+19777406..19781128NB-ARC domain containing protein, expressed
LOC_Os12g32790OsAffx.7771.1.S1_x_at8/1112+19777406..19781128NB-ARC domain containing protein, expressed
LOC_Os12g32800OsAffx.22145.1.S1_x_at1/1112+19785197..19796040retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g32810NANA12+19797561..19798097hypothetical protein
LOC_Os12g32820Os.49696.1.S1_at11/1112+19804196..19808546PDR-like ABC transporter, putative, expressed
LOC_Os12g32840OsAffx.31992.1.S1_at11/1112+19819131..19819800hypothetical protein
LOC_Os12g32850OsAffx.31993.1.S1_at11/1112+19820535..19822905Cytochrome P450 71E1, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22145.1.S1_x_at--905--7571Chr01:5399917..5399941 (25 bp)
GGGCGGTCACGAGATGTCTGGGCGA
NONE
OsAffx.22145.1.S1_x_at--358--9691Chr01:5399923..5399947 (25 bp)
TCACGAGATGTCTGGGCGAGGGCGA
NONE
OsAffx.22145.1.S1_x_at--487--8371Chr01:5399949..5399973 (25 bp)
GGCGAGACGCGCTGGCTTTTCGATT
NONE
OsAffx.22145.1.S1_x_at--661--1391Chr01:5399953..5399977 (25 bp)
AGACGCGCTGGCTTTTCGATTGTAC
NONE
OsAffx.22145.1.S1_x_at--366--1831Chr01:5399955..5399979 (25 bp)
ACGCGCTGGCTTTTCGATTGTACCT
NONE
OsAffx.22145.1.S1_x_at--661--3891Chr01:5399960..5399984 (25 bp)
CTGGCTTTTCGATTGTACCTGCCGC
NONE
OsAffx.22145.1.S1_x_at--1048--8271Chr01:5399962..5399986 (25 bp)
GGCTTTTCGATTGTACCTGCCGCCG
NONE
OsAffx.22145.1.S1_x_at--317--10311Chr01:5399966..5399990 (25 bp)
TTTCGATTGTACCTGCCGCCGATGG
NONE
OsAffx.22145.1.S1_x_at--10--4071Chr01:5399985..5400008 (24 bp)
CGATGGCCTCGATCGCACGCGGAGC
NONE
OsAffx.22145.1.S1_x_at--72--6391Chr01:5399995..5400415 (25 bp)
GATCGCACGCGGAGCGGCGGCTGAG
NONE
OsAffx.22145.1.S1_x_at--65--7555Chr12:19785334..19785355 (22 bp)
GTGGCGGCGGCTCGTGGCAGTGGGA
LOC_Os12g32800
Target Sequence 
GGGCGGTCACGAGATGTCTGGGCGAGGGCGAGGGCGAGACGCGCTGGCTTTTCGATTGTACCTGCCGCCGATGGCCTCGA
TCGCACGCGGAGCGGCGGCTGAGGGACAGGGGCCGGCGGCGGCGGGAGGGCAGGCGGGCGAGGGTGGCGGCGGCTCGTGG
CAGTGGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22145.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis