Browse Element(s) Details


OsAffx.31992.1.S1_at

Description tigr:9640.m03196
TID=OsAffx.31992.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3284011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g32800OsAffx.22145.1.S1_x_at1/1112+19785197..19796040retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g32810NANA12+19797561..19798097hypothetical protein
LOC_Os12g32820Os.49696.1.S1_at11/1112+19804196..19808546PDR-like ABC transporter, putative, expressed
LOC_Os12g32840OsAffx.31992.1.S1_at11/1112+19819131..19819800hypothetical protein
LOC_Os12g32850OsAffx.31993.1.S1_at11/1112+19820535..19822905Cytochrome P450 71E1, putative
LOC_Os12g32870OsAffx.31994.1.S1_at11/1112+19836837..19839307hypothetical protein
LOC_Os12g32880OsAffx.31995.1.S1_at11/1112+19842756..19844036hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31992.1.S1_at--320--5211Chr12:19819161..19819185 (25 bp)
GAATTCCTCAGTTCACATTTGGAAC
LOC_Os12g32840
OsAffx.31992.1.S1_at--962--191Chr12:19819177..19819201 (25 bp)
ATTTGGAACAGATAGAGGGCGTGCA
LOC_Os12g32840
OsAffx.31992.1.S1_at--1146--3851Chr12:19819209..19819233 (25 bp)
CTGTTTGGCGAAGCTAGGAGGTTAA
LOC_Os12g32840
OsAffx.31992.1.S1_at--342--4591Chr12:19819216..19819240 (25 bp)
GCGAAGCTAGGAGGTTAAAACATCA
LOC_Os12g32840
OsAffx.31992.1.S1_at--1137--2391Chr12:19819233..19819257 (25 bp)
AAACATCAAGTCTGCCATGCGGTCT
LOC_Os12g32840
OsAffx.31992.1.S1_at--732--9191Chr12:19819245..19819269 (25 bp)
TGCCATGCGGTCTTGGTGGGACACA
LOC_Os12g32840
OsAffx.31992.1.S1_at--1109--8611Chr12:19819258..19819282 (25 bp)
TGGTGGGACACACTTTGGTTGCTTC
LOC_Os12g32840
OsAffx.31992.1.S1_at--412--7911Chr12:19819274..19819298 (25 bp)
GGTTGCTTCGGCAAAGCACCATCGA
LOC_Os12g32840
OsAffx.31992.1.S1_at--118--8231Chr12:19819283..19819307 (25 bp)
GGCAAAGCACCATCGACGCAAGGGT
LOC_Os12g32840
OsAffx.31992.1.S1_at--109--1851Chr12:19819298..19819322 (25 bp)
ACGCAAGGGTGTGCACGGCCCACGA
LOC_Os12g32840
OsAffx.31992.1.S1_at--978--971Chr12:19819323..19819768 (25 bp)
AGGAGGTGGTTAGCATTATGGAAAA
LOC_Os12g32840
Target Sequence 
GAATTCCTCAGTTCACATTTGGAACAGATAGAGGGCGTGCAGGAGAGGCTGTTTGGCGAAGCTAGGAGGTTAAAACATCA
AGTCTGCCATGCGGTCTTGGTGGGACACACTTTGGTTGCTTCGGCAAAGCACCATCGACGCAAGGGTGTGCACGGCCCAC
GAAGGAGGTGGTTAGCATTATGGAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31992.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis