Browse Element(s) Details


OsAffx.28555.1.S1_at

Description tigr:9635.m02244
TID=OsAffx.28555.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2356011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g23540OsAffx.16381.2.S1_x_at11/117+13293115..13303996expressed protein
LOC_Os07g23540OsAffx.16381.1.S1_x_at7/117+13293115..13303996expressed protein
LOC_Os07g23540OsAffx.16381.3.S1_x_at4/117+13293115..13303996expressed protein
LOC_Os07g23550Os.7469.1.S1_at11/117+13311880..13314898expressed protein
LOC_Os07g23560OsAffx.28555.1.S1_at11/117+13320480..13321350hypothetical protein
LOC_Os07g23570Os.9017.1.S1_x_at11/117+13322237..13324546Cytochrome P450 family protein, expressed
LOC_Os07g23580NANA7+13328336..13329246hypothetical protein
LOC_Os07g23590NANA7+13335527..13335820hypothetical protein
LOC_Os07g23600OsAffx.5415.1.S1_at11/117+13340955..13341623Root cap family protein
LOC_Os07g23610NANA7+13345750..13347138transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28555.1.S1_at--737--8371Chr07:13320517..13320541 (25 bp)
GGCGACGACGGCAACCCAGCGGTCT
LOC_Os07g23560
OsAffx.28555.1.S1_at--270--1671Chr07:13320554..13320578 (25 bp)
AGCCTTCCTTGCTGGTGCTGGACGT
LOC_Os07g23560
OsAffx.28555.1.S1_at--281--8671Chr07:13320591..13320615 (25 bp)
TGTGTGGTGAGCGTCTGGCCTCTAC
LOC_Os07g23560
OsAffx.28555.1.S1_at--346--4011Chr07:13320602..13320650 (25 bp)
CGTCTGGCCTCTACCCGGATTTGGG
LOC_Os07g23560
OsAffx.28555.1.S1_at--503--3551Chr07:13320659..13320683 (25 bp)
GTCGTACTTCGGTGGACGTTCCAGT
LOC_Os07g23560
OsAffx.28555.1.S1_at--306--10671Chr07:13320677..13320701 (25 bp)
TTCCAGTGCCACGACATTTGGACGG
LOC_Os07g23560
OsAffx.28555.1.S1_at--319--3351Chr07:13320686..13320710 (25 bp)
CACGACATTTGGACGGCGGGAGCTT
LOC_Os07g23560
OsAffx.28555.1.S1_at--707--291Chr07:13320715..13320739 (25 bp)
ATAGAGGGTATCATTGGCATGGTGC
LOC_Os07g23560
OsAffx.28555.1.S1_at--853--3191Chr07:13320757..13320781 (25 bp)
CAAGGCGACGACAAAACGGTCTGGT
LOC_Os07g23560
OsAffx.28555.1.S1_at--680--2371Chr07:13320770..13320794 (25 bp)
AAACGGTCTGGTGGCCCGATGTGAC
LOC_Os07g23560
OsAffx.28555.1.S1_at--603--4231Chr07:13320785..13320809 (25 bp)
CCGATGTGACGCGAGCAACGGGATT
LOC_Os07g23560
Target Sequence 
GGCGACGACGGCAACCCAGCGGTCTCGACGCGGCGCGAGCCTTCCTTGCTGGTGCTGGACGTGACGGCTTGGTCTGTGTG
GTGAGCGTCTGGCCTCTACCCGGATTTGGGGTGAGAGCGTCGTACTTCGGTGGACGTTCCAGTGCCACGACATTTGGACG
GCGGGAGCTTTGTGATAGAGGGTATCATTGGCATGGTGCGGAGGGTGGCAAGGTGGCAAGGCGACGACAAAACGGTCTGG
TGGCCCGATGTGACGCGAGCAACGGGATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28555.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis