Browse Element(s) Details


Os.9017.1.S1_x_at

Description gb:AK119557.1
DB_XREF= gi:37989180
TID=Os.9017.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9017 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-106-A06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-106-A06, full insert sequence.
FL= gb:AK119557.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2357011/11Cytochrome P450 family protein, expressed
LOC_Os07g237103/11Cytochrome P450 family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g23540OsAffx.16381.2.S1_x_at11/117+13293115..13303996expressed protein
LOC_Os07g23540OsAffx.16381.1.S1_x_at7/117+13293115..13303996expressed protein
LOC_Os07g23540OsAffx.16381.3.S1_x_at4/117+13293115..13303996expressed protein
LOC_Os07g23550Os.7469.1.S1_at11/117+13311880..13314898expressed protein
LOC_Os07g23560OsAffx.28555.1.S1_at11/117+13320480..13321350hypothetical protein
LOC_Os07g23570Os.9017.1.S1_x_at11/117+13322237..13324546Cytochrome P450 family protein, expressed
LOC_Os07g23580NANA7+13328336..13329246hypothetical protein
LOC_Os07g23590NANA7+13335527..13335820hypothetical protein
LOC_Os07g23600OsAffx.5415.1.S1_at11/117+13340955..13341623Root cap family protein
LOC_Os07g23610NANA7+13345750..13347138transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g23620Os.46306.1.S1_x_at6/117+13347999..13348847transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0009416biological_processresponse to light stimulus
GO:0009741biological_processresponse to brassinosteroid stimulus
GO:0016131biological_processbrassinosteroid metabolism
GO:0008395molecular_functionsteroid hydroxylase activity
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9017.1.S1_x_at--1047--10032Chr07:13323954..13323978 (25 bp)
TAGAGACCCTAAGGCTGTACAGCCC
LOC_Os07g23570
Os.9017.1.S1_x_at--47--4551Chr07:13323975..13323999 (25 bp)
GCCCTGTCTCACTCATACGGAGGAA
LOC_Os07g23570
Os.9017.1.S1_x_at--741--5631Chr07:13324004..13324028 (25 bp)
GACACTGATATTGAGCTCGGCGGCA
LOC_Os07g23570
Os.9017.1.S1_x_at--391--4972Chr07:13324026..13324050 (25 bp)
GCATCAAGATGCCTGAGGGTGCACT
LOC_Os07g23570
Os.9017.1.S1_x_at--541--7771Chr07:13324043..13324067 (25 bp)
GGTGCACTATTGACGATCCCGATCG
LOC_Os07g23570
Os.9017.1.S1_x_at--800--4051Chr07:13324062..13324086 (25 bp)
CGATCGCGACAATTCACCGTGACAA
LOC_Os07g23570
Os.9017.1.S1_x_at--320--712Chr07:13324250..13324274 (25 bp)
ATGATCCTACAGAGGTTCTCCTTCA
LOC_Os07g23570
Os.9017.1.S1_x_at--740--651Chr07:13324296..13324320 (25 bp)
ATGCACCCACTGATGTGATCACGCT
LOC_Os07g23570
Os.9017.1.S1_x_at--417--572Chr07:13324346..13324370 (25 bp)
ATCCTCAAGAGCCTCAAGCTGTAGG
LOC_Os07g23570
Os.9017.1.S1_x_at--1089--5192Chr07:13324393..13324417 (25 bp)
GAATTGTCCTTTCTCTTCTATAAGA
LOC_Os07g23570
Os.9017.1.S1_x_at--372--9791Chr07:13324413..13324437 (25 bp)
TAAGAGTTTGCCACTTCGCTGGTAG
LOC_Os07g23570
Target Sequence 
TAGAGACCCTAAGGCTGTACAGCCCTGTCTCACTCATACGGAGGAAGGTTGACACTGATATTGAGCTCGGCGGCATCAAG
ATGCCTGAGGGTGCACTATTGACGATCCCGATCGCGACAATTCACCGTGACAAGGAAGTGTGGGGGGAGGATGCGGATGA
GTTTAGGCCGGAGAGGTTCGAGAATGGGGTGACGAGGGCAGCGAAGCACCCCAACGCACTACTCTCCTTCTCCANCGGAC
CNGAGGTCATGCATTGGGCAGAACTTTGCAATGANCGAGGCCNAAGGCTGTCANTGCCATGATCCTACAGAGGTTCTCCT
TCACTTTGTCCCCCAAGTACGTCCATGCACCCACTGATGTGATCACGCTGCGTCCCAAGTACGGGCTCCCTATGATCCTC
AAGAGCCTCAAGCTGTAGGGAGAAATACGTAAGAAATATATGAATTGTCCTTTCTCTTCTATAAGAGTTTGCCACTTCGC
TGGTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9017.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis