Browse Element(s) Details


OsAffx.16381.4.A1_at

Description tigr:9635.m02241
TID=OsAffx.16381.4
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g231101/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g23080OsAffx.20428.1.S1_at11/1110+11697291..11699819hypothetical protein
LOC_Os10g23090Os.8598.1.S1_s_at11/1110+11710269..11711707Homeobox domain containing protein, expressed
LOC_Os10g23100Os.6444.1.S1_at10/1110+11716705..11721554Ras-related protein Rab11D, putative, expressed
LOC_Os10g23100Os.6444.2.S1_x_at10/1110+11716705..11721554Ras-related protein Rab11D, putative, expressed
LOC_Os10g23110OsAffx.16381.1.S1_x_at11/1110+11724253..11733513hypothetical protein
LOC_Os10g23110OsAffx.16381.2.S1_x_at3/1110+11724253..11733513hypothetical protein
LOC_Os10g23110OsAffx.16381.3.S1_x_at3/1110+11724253..11733513hypothetical protein
LOC_Os10g23110OsAffx.3613.1.S1_at3/1110+11724253..11733513hypothetical protein
LOC_Os10g23110OsAffx.27522.1.S1_x_at2/1110+11724253..11733513hypothetical protein
LOC_Os10g23110OsAffx.3613.1.S1_x_at2/1110+11724253..11733513hypothetical protein
LOC_Os10g23110OsAffx.16381.4.A1_at1/1110+11724253..11733513hypothetical protein
LOC_Os10g23110OsAffx.16187.1.S1_at1/1110+11724253..11733513hypothetical protein
LOC_Os10g23120Os.16785.1.S1_at11/1110+11736406..11742276pyridoxamine 5'-phosphate oxidase, putative, expressed
LOC_Os10g23130OsAffx.6744.1.S1_at11/1110+11746889..11749084Cytochrome P450 90D2, putative
LOC_Os10g23140NANA10+11749454..11750374retrotransposon protein, putative, unclassified
LOC_Os10g23150OsAffx.20427.1.S1_at11/1110+11750672..11753497retrotransposon protein, putative, unclassified
LOC_Os10g23160NANA10+11754855..11756111ent-kaurenoic acid oxidase, putative

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16381.4.A1_at--676--3811Chr07:13292142..13292166 (25 bp)
CTGCGCCGAGACCAGGGACCATGGA
NONE
OsAffx.16381.4.A1_at--26--4252Chr10:11724703..11724728 (25 bp)
CCGTGCAGGGAGTATGGGCCCATGT
LOC_Os10g23110
OsAffx.16381.4.A1_at--1157--10091Chr07:13292197..13292221 (25 bp)
TATGGGCCCATGTTTGTACTGGTTG
NONE
OsAffx.16381.4.A1_at--694--8651Chr07:13292199..13292223 (25 bp)
TGGGCCCATGTTTGTACTGGTTGGC
NONE
OsAffx.16381.4.A1_at--271--3931Chr07:13292270..13292294 (25 bp)
CGGCGCGAGGAAACCGTCATAAATC
NONE
OsAffx.16381.4.A1_at--132--6191Chr07:13292276..13292300 (25 bp)
GAGGAAACCGTCATAAATCGCGCCG
NONE
OsAffx.16381.4.A1_at--1141--5531Chr07:13292279..13292303 (25 bp)
GAAACCGTCATAAATCGCGCCGGTA
NONE
OsAffx.16381.4.A1_at--535--1771Chr07:13292282..13292306 (25 bp)
ACCGTCATAAATCGCGCCGGTACTG
NONE
OsAffx.16381.4.A1_at--251--3551Chr07:13292287..13292311 (25 bp)
CATAAATCGCGCCGGTACTGTTTTC
NONE
OsAffx.16381.4.A1_at--710--3671Chr07:13292356..13292380 (25 bp)
CTTTTCTCTGTTCGCCTTTCTTGCG
NONE
OsAffx.16381.4.A1_at--247--10651Chr07:13292366..13292390 (25 bp)
TTCGCCTTTCTTGCGTCCTCAATGG
NONE
Target Sequence 
CTGCGCCGAGACCAGGGACCATGGATATATATCCAGTTTGCTCCCGTGCAGGGAGTATGGGCCCATGTTTGTACTGGTTG
GCGAATGGGAGATAGACAACGCTATACAGGCCTGCTCCATGCGGCGTGCGGCGCGAGGAAACCGTCATAAATCGCGCCGG
TACTGTTTTCCCCTTTTCTTTTTCGTCCCCTTCCTTCTTCTCCACCCTAATCCCCTTTTCTCTGTTCGCCTTTCTTGCGT
CCTCAATGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16381.4.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis