Browse Element(s) Details


OsAffx.6744.1.S1_at

Description tigr:9638.m01967
TID=OsAffx.6744.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to cytochrome P450 like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2313011/11Cytochrome P450 90D2, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g23110OsAffx.16381.1.S1_x_at11/1110+11724253..11733513hypothetical protein
LOC_Os10g23110OsAffx.16381.2.S1_x_at3/1110+11724253..11733513hypothetical protein
LOC_Os10g23110OsAffx.16381.3.S1_x_at3/1110+11724253..11733513hypothetical protein
LOC_Os10g23110OsAffx.3613.1.S1_at3/1110+11724253..11733513hypothetical protein
LOC_Os10g23110OsAffx.27522.1.S1_x_at2/1110+11724253..11733513hypothetical protein
LOC_Os10g23110OsAffx.3613.1.S1_x_at2/1110+11724253..11733513hypothetical protein
LOC_Os10g23110OsAffx.16381.4.A1_at1/1110+11724253..11733513hypothetical protein
LOC_Os10g23110OsAffx.16187.1.S1_at1/1110+11724253..11733513hypothetical protein
LOC_Os10g23120Os.16785.1.S1_at11/1110+11736406..11742276pyridoxamine 5'-phosphate oxidase, putative, expressed
LOC_Os10g23130OsAffx.6744.1.S1_at11/1110+11746889..11749084Cytochrome P450 90D2, putative
LOC_Os10g23140NANA10+11749454..11750374retrotransposon protein, putative, unclassified
LOC_Os10g23150OsAffx.20427.1.S1_at11/1110+11750672..11753497retrotransposon protein, putative, unclassified
LOC_Os10g23160NANA10+11754855..11756111ent-kaurenoic acid oxidase, putative
LOC_Os10g23180Os.18932.1.S1_at11/1110+11758871..11767257Cytochrome P450 family protein, expressed
LOC_Os10g23190OsAffx.29313.1.S1_at1/1110+11769778..11775651transposon protein, putative, Mutator sub-class
LOC_Os10g23190OsAffx.22896.1.S1_x_at1/1110+11769778..11775651transposon protein, putative, Mutator sub-class
LOC_Os10g23190Os.46314.2.S1_x_at1/1110+11769778..11775651transposon protein, putative, Mutator sub-class
LOC_Os10g23190Os.10731.2.A1_at1/1110+11769778..11775651transposon protein, putative, Mutator sub-class

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6744.1.S1_at--235--8091Chr10:11749001..11749025 (25 bp)
GGAGCCAGCTTCATTACTCTAGATG
LOC_Os10g23130
OsAffx.6744.1.S1_at--720--3151Chr10:11748847..11748871 (25 bp)
AATTCGGTTGGCCAACATATCTCCG
LOC_Os10g23130
OsAffx.6744.1.S1_at--953--2491Chr10:11748834..11748858 (25 bp)
AACATATCTCCGATGCTTTACCGGG
LOC_Os10g23130
OsAffx.6744.1.S1_at--181--631Chr10:11748822..11748846 (25 bp)
ATGCTTTACCGGGTGGCACTCAGAG
LOC_Os10g23130
OsAffx.6744.1.S1_at--520--6031Chr10:11748307..11748824 (25 bp)
GAGATGTCGAGTACCGAGGTTATAC
LOC_Os10g23130
OsAffx.6744.1.S1_at--766--4231Chr10:11748249..11748273 (25 bp)
CCGATCACTACATGTTGACCCTAAA
LOC_Os10g23130
OsAffx.6744.1.S1_at--418--10451Chr10:11748222..11748246 (25 bp)
TTACGATGATCCGTTGAGCTTCAAC
LOC_Os10g23130
OsAffx.6744.1.S1_at--680--6651Chr10:11748210..11748234 (25 bp)
GTTGAGCTTCAACCCCGACAGATGG
LOC_Os10g23130
OsAffx.6744.1.S1_at--423--11Chr10:11746992..11747016 (25 bp)
ATTCACTAAACTTCCAAACCTTCAT
LOC_Os10g23130
OsAffx.6744.1.S1_at--209--7031Chr10:11746962..11746986 (25 bp)
GTACATGTGTACAATTATTCTCAGT
LOC_Os10g23130
OsAffx.6744.1.S1_at--775--3751Chr10:11746943..11746967 (25 bp)
CTCAGTAATAATTCACCCTCTGTAT
LOC_Os10g23130
Target Sequence 
GGAGCCAGCTTCATTACTCTAGATGACATCTCCAAGATGAAGTACACAGCCAAGGTAGTGGAAGAAACAATTCGGTTGGC
CAACATATCTCCGATGCTTTACCGGGTGGCACTCAGAGATGTCGAGTACCGAGGTTATACAATACCAGAGGGGTGGAAAG
TAATTGTGTGGATCCGATCACTACATGTTGACCCTAAATATTACGATGATCCGTTGAGCTTCAACCCCGACAGATGGGAT
AAAGCAGCGAAGCCAGGCACGTACCAGGTGTTCGGTGGCGGCGAGAGGATCTGCGCCGGCAACATGCTGGCAAGGCTGCA
GCTCACCATCATGCTCCATCATCTCTCTTGTGGTTACAAGTATTCACTAAACTTCCAAACCTTCATTAACAGTACATGTG
TACAATTATTCTCAGTAATAATTCACCCTCTGTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6744.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis