Browse Element(s) Details


Os.16785.1.S1_at

Description gb:AK099380.1
DB_XREF= gi:32984589
TID=Os.16785.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.16785 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative pyridoxamine 5-phosphate oxidase (OSJNBa0095C06.17), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033070K02, full insert sequence.
FL= gb:AK099380.1 gb:AK066800.1 gb:AK104008.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2312011/11pyridoxamine 5'-phosphate oxidase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g23090Os.8598.1.S1_s_at11/1110+11710269..11711707Homeobox domain containing protein, expressed
LOC_Os10g23100Os.6444.1.S1_at10/1110+11716705..11721554Ras-related protein Rab11D, putative, expressed
LOC_Os10g23100Os.6444.2.S1_x_at10/1110+11716705..11721554Ras-related protein Rab11D, putative, expressed
LOC_Os10g23110OsAffx.16381.1.S1_x_at11/1110+11724253..11733513hypothetical protein
LOC_Os10g23110OsAffx.16381.2.S1_x_at3/1110+11724253..11733513hypothetical protein
LOC_Os10g23110OsAffx.16381.3.S1_x_at3/1110+11724253..11733513hypothetical protein
LOC_Os10g23110OsAffx.3613.1.S1_at3/1110+11724253..11733513hypothetical protein
LOC_Os10g23110OsAffx.27522.1.S1_x_at2/1110+11724253..11733513hypothetical protein
LOC_Os10g23110OsAffx.3613.1.S1_x_at2/1110+11724253..11733513hypothetical protein
LOC_Os10g23110OsAffx.16381.4.A1_at1/1110+11724253..11733513hypothetical protein
LOC_Os10g23110OsAffx.16187.1.S1_at1/1110+11724253..11733513hypothetical protein
LOC_Os10g23120Os.16785.1.S1_at11/1110+11736406..11742276pyridoxamine 5'-phosphate oxidase, putative, expressed
LOC_Os10g23130OsAffx.6744.1.S1_at11/1110+11746889..11749084Cytochrome P450 90D2, putative
LOC_Os10g23140NANA10+11749454..11750374retrotransposon protein, putative, unclassified
LOC_Os10g23150OsAffx.20427.1.S1_at11/1110+11750672..11753497retrotransposon protein, putative, unclassified
LOC_Os10g23160NANA10+11754855..11756111ent-kaurenoic acid oxidase, putative
LOC_Os10g23180Os.18932.1.S1_at11/1110+11758871..11767257Cytochrome P450 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008615biological_processpyridoxine biosynthesis
GO:0004733molecular_functionpyridoxamine-phosphate oxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16785.1.S1_at--199--2531Chr10:11737026..11737050 (25 bp)
AACTTTTTGAGTTCTGGCAAGGCCA
LOC_Os10g23120
Os.16785.1.S1_at--282--4991Chr10:11736904..11737013 (25 bp)
GCATGACCGGCTTCAGTATTCACTG
LOC_Os10g23120
Os.16785.1.S1_at--637--851Chr10:11736856..11736880 (25 bp)
ATGGCACATCGAGAGGTTGTCCCCT
LOC_Os10g23120
Os.16785.1.S1_at--203--5251Chr10:11736773..11736797 (25 bp)
GAATCAAATCTTATCCCAGCTGCAA
LOC_Os10g23120
Os.16785.1.S1_at--363--1151Chr10:11736746..11736770 (25 bp)
AGTCCCAATTGCTCGATGATGTTAG
LOC_Os10g23120
Os.16785.1.S1_at--157--10071Chr10:11736724..11736748 (25 bp)
TAGTGCCATGATTAGGTCGCGTGTT
LOC_Os10g23120
Os.16785.1.S1_at--658--8991Chr10:11736683..11736707 (25 bp)
TGAAGCTCTGCTTTTTGACATGCCC
LOC_Os10g23120
Os.16785.1.S1_at--214--2191Chr10:11736655..11736679 (25 bp)
ACACATCTGATGTTCTCTGAAGCAC
LOC_Os10g23120
Os.16785.1.S1_at--262--7991Chr10:11736625..11736649 (25 bp)
GGATGAATCCATGAAGGCCCTTCTC
LOC_Os10g23120
Os.16785.1.S1_at--438--2951Chr10:11736612..11736636 (25 bp)
AAGGCCCTTCTCTTGGTCATAAGAT
LOC_Os10g23120
Os.16785.1.S1_at--915--1471Chr10:11736535..11736559 (25 bp)
AGAATCTCATTATCTCAGCCTGGAG
LOC_Os10g23120
Target Sequence 
AACTTTTTGAGTTCTGGCAAGGCCAACAGTCTCGACTGCATGACCGGCTTCAGTATTCACTGCGAGAAGTAGATAGGAGC
ACAGTATGGCACATCGAGAGGTTGTCCCCTTGACTAGTAACCCCATCCCAGCTCTTTGGTAATAAAAAGGATCTCATCTT
ATTATCAAGAATCAAATCTTATCCCAGCTGCAAGGAGTCCCAATTGCTCGATGATGTTAGTGCCATGATTAGGTCGCGTG
TTTGAGACTGTGAGTGCCTGAAGCTCTGCTTTTTGACATGCCCTTCACACATCTGATGTTCTCTGAAGCACAGAGTGGAT
GAATCCATGAAGGCCCTTCTCTTGGTCATAAGATTTTTCTGTAAATGCCATTAAATTTTAACCGTCCTGTAGAAAGAATT
ATGATGAGAATCTCATTATCTCAGCCTGGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16785.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis