Browse Element(s) Details


Os.16804.1.S1_at

Description gb:AK111349.1
DB_XREF= gi:32996558
TID=Os.16804.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.16804 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-181-G05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-181-G05, full insert sequence.
FL= gb:AK111349.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2306010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g23004OsAffx.18355.1.S1_at11/1110+11662463..11665658hypothetical protein
LOC_Os10g23020NANA10+11669997..11670275hypothetical protein
LOC_Os10g23030OsAffx.6743.1.S1_at11/1110+11674593..11678357hypothetical protein
LOC_Os10g23030Os.54455.1.S1_at1/1110+11674593..11678357hypothetical protein
LOC_Os10g23039NANA10+11682308..11682780NA
LOC_Os10g23050Os.46600.1.S1_at11/1110+11684489..11686279Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os10g23060OsAffx.20429.1.S1_at11/1110+11690388..11692922expressed protein
LOC_Os10g23060Os.16804.1.S1_at10/1110+11690388..11692922expressed protein
LOC_Os10g23080OsAffx.20428.1.S1_at11/1110+11697291..11699819hypothetical protein
LOC_Os10g23090Os.8598.1.S1_s_at11/1110+11710269..11711707Homeobox domain containing protein, expressed
LOC_Os10g23100Os.6444.1.S1_at10/1110+11716705..11721554Ras-related protein Rab11D, putative, expressed
LOC_Os10g23100Os.6444.2.S1_x_at10/1110+11716705..11721554Ras-related protein Rab11D, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16804.1.S1_at--324--411NONE
ATCATCCACAAGGTTGACGAAATCG
NONE
Os.16804.1.S1_at--434--5371Chr10:11692375..11692399 (25 bp)
GAAGACGATGATCGAGCCGATTATA
LOC_Os10g23060
Os.16804.1.S1_at--991--6191Chr10:11692422..11692446 (25 bp)
GAGGCACCATTAAGAAGCACTAAAT
LOC_Os10g23060
Os.16804.1.S1_at--755--5971Chr10:11692452..11692476 (25 bp)
GAGAACTCAACTTCAGCTCTGTACA
LOC_Os10g23060
Os.16804.1.S1_at--774--1011Chr10:11692507..11692531 (25 bp)
AGGTCTTTAGCCAATATTCGTCGAA
LOC_Os10g23060
Os.16804.1.S1_at--1100--6751Chr10:11692547..11692571 (25 bp)
GTTAATATTCCCCTGTTAAGCAGAG
LOC_Os10g23060
Os.16804.1.S1_at--732--171Chr10:11692697..11692721 (25 bp)
ATTTTCAATCAATCTCCCTCTCGGT
LOC_Os10g23060
Os.16804.1.S1_at--530--9312Chr10:11692711..11692735 (25 bp)
TCCCTCTCGGTCTCGAATTAATCAA
LOC_Os10g23060
Os.16804.1.S1_at--532--6091Chr10:11692779..11692803 (25 bp)
GAGTACAAGTATCAACAGCAGCGGC
LOC_Os10g23060
Os.16804.1.S1_at--52--5411Chr10:11692807..11692831 (25 bp)
GAAGCCGCGGCTATCTAAAAATTCT
LOC_Os10g23060
Os.16804.1.S1_at--815--9512Chr10:11692829..11692853 (25 bp)
TCTAAATCTAGAACACGACGGCGGC
LOC_Os10g23060
Target Sequence 
ATCATCCACAAGGTTGACGAAATCGAAGAGGACGTGAAGACGATGATCGAGCCGATTATAGATAATCACAAGCATGGCAC
NAGAGGCACCATTAAGAAGCACTAAATTTTCAGAGAACTCAACTTCAGCTCTGTACAAATGTTCAGATTGTTTGTGCAAA
NCCTCTTAGGTCTTTAGCCAATATTCGTCGAATCGGTTAATTCAATTGTTAATATTCCCCTGTTAAGCAGAGCAACAAAT
GGGAGAAGAATTTATCAAACTTTTTCAGATAATGTTCTACGAAATTACTTCACTTATCTTCTATGAAGCATGTAATGATA
ATCATTTCCGCTTGAAAAAAAANCCCGAATAATATCTCATTTTCAATCAATCTCCCTCTCGGTCTCGAATTAATCAAACA
AATAAAGAATGGGGAAAAAAACGAGAACAGAGTGGCGGTAGAGTACAAGTATCAACAGCAGCGGCGGCGAAGCCGCGGCT
ATCTAAAAATTCTAAATCTAGAACACGACGGCGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16804.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis