Browse Element(s) Details


Os.9046.1.S1_x_at

Description gb:AK121005.1
DB_XREF= gi:37990628
TID=Os.9046.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.9046 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0095C06.5), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023045N14, full insert sequence.
FL= gb:AK121005.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2298010/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g22970OsAffx.218.1.A1_at5/1110+11630557..11630793hypothetical protein
LOC_Os10g22980Os.9046.1.S1_x_at10/1110+11649636..11654706Leucine Rich Repeat family protein, expressed
LOC_Os10g22980Os.9046.1.S1_at10/1110+11649636..11654706Leucine Rich Repeat family protein, expressed
LOC_Os10g22980Os.16062.1.S1_at10/1110+11649636..11654706Leucine Rich Repeat family protein, expressed
LOC_Os10g22990NANA10+11658205..11659209Phosphate-induced protein 1 conserved region containing protein
LOC_Os10g23004OsAffx.18355.1.S1_at11/1110+11662463..11665658hypothetical protein
LOC_Os10g23020NANA10+11669997..11670275hypothetical protein
LOC_Os10g23030OsAffx.6743.1.S1_at11/1110+11674593..11678357hypothetical protein
LOC_Os10g23030Os.54455.1.S1_at1/1110+11674593..11678357hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9046.1.S1_x_at--857--7231Chr10:11654157..11654181 (25 bp)
GTCCAGGCCAACGTCGGTGACGACG
LOC_Os10g22980
Os.9046.1.S1_x_at--1014--7631Chr10:11654312..11654336 (25 bp)
GGGAGGCTCCCGTAGCGCGCGGAAG
LOC_Os10g22980
Os.9046.1.S1_x_at--444--7271Chr10:11654482..11654506 (25 bp)
GTCCATTTTGTGTTGTTGCGATACA
LOC_Os10g22980
Os.9046.1.S1_x_at--728--7411Chr10:11654491..11654515 (25 bp)
GTGTTGTTGCGATACATTCGAATTT
LOC_Os10g22980
Os.9046.1.S1_x_at--407--71Chr10:11654571..11654595 (25 bp)
ATTGCTGCGGGTGTGAAGTTTGACT
LOC_Os10g22980
Os.9046.1.S1_x_at--1010--5212Chr11:9874101..9874125 (25 bp)
GAATATTGTTGTTCAGTTTGCAAAT
NONE
Os.9046.1.S1_x_at--1125--3291Chr10:11654616..11654640 (25 bp)
CAAATTATTACAGTGCATCATTGCA
LOC_Os10g22980
Os.9046.1.S1_x_at--689--3451Chr10:11654626..11654650 (25 bp)
CAGTGCATCATTGCAGCTAATAGTA
LOC_Os10g22980
Os.9046.1.S1_x_at--1052--4831Chr10:11654641..11654665 (25 bp)
GCTAATAGTAGGTGTGTGTGATGAT
LOC_Os10g22980
Os.9046.1.S1_x_at--124--2291Chr10:11654673..11654697 (25 bp)
AAATGATGCCAAAATCCTGTTCTTG
LOC_Os10g22980
Os.9046.1.S1_x_at--246--2451Chr10:11654683..11654707 (25 bp)
AAAATCCTGTTCTTGGTCGATCTTA
NONE
Target Sequence 
GTCCAGGCCAACGTCGGTGACGACGCCCTCCGCAGGGCCGTCACGGGCCTCCTCCCCCACCTCGCCTACCTCAACAAGCA
GCCCGTCAAGCCCCGCGGCGCCGCCCCCGCCGACGGCGCCGTGTCGCGCGCCGCGCTCGAGGCCGGCGGCGCCGGGGGAG
GCTCCCGTAGCGCGCGGAAGCGGTCGTCCGCTGCGGCGGCGTCGCGGAGGCTGGGGCAGCGCGGCGAGGGGAGCGGGAGC
GGGAGGAGCAGGTCCAAGGGGAGGCAGCCGTCGAGCAGCTTGCCGGCGAGGAGGTGAAGACGGCGGCGGCGGCGGCGAGT
NCGANGTCCATTTTGTGTTGTTGCGATACATTCGAATTTAGAATTTGAAGATCTTTTGAATTTGGAATTTNGATTNGAGA
GAGAGAGCGTATGTATTGCTGCGGGTGTGAAGTTTGACTGAATATTGTTGTTCAGTTTGCAAATTATTACAGTGCATCAT
TGCAGCTAATAGTAGGTGTGTGTGATGATGAGTGGAAAATGATGCCAAAATCCTGTTCTTGGTCGATCTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9046.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis