Browse Element(s) Details


Os.23201.1.S1_at

Description gb:AK058482.1
DB_XREF= gi:32968500
TID=Os.23201.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.23201 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-016-D05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-016-D05, full insert sequence.
FL= gb:AK058482.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3368011/11succinate dehydrogenase subunit 3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g33650Os.10455.1.S1_at11/117+20105113..20108087expressed protein
LOC_Os07g33660Os.36706.1.S1_at2/117+20111898..20113159expressed protein
LOC_Os07g33670Os.24572.1.S1_at6/117+20113836..20121270patatin family protein, putative, expressed
LOC_Os07g33670OsAffx.21802.1.S1_at1/117+20113836..20121270patatin family protein, putative, expressed
LOC_Os07g33670OsAffx.18355.1.S1_at1/117+20113836..20121270patatin family protein, putative, expressed
LOC_Os07g33680Os.23201.1.S1_at11/117+20125344..20127139succinate dehydrogenase subunit 3, putative, expressed
LOC_Os07g33690Os.57049.1.S1_at11/117+20127954..20133545NB-ARC domain containing protein, expressed
LOC_Os07g33700Os.35344.3.S1_x_at10/117+20134667..20140527transposon protein, putative, Mutator sub-class
LOC_Os07g33700Os.35344.18.S1_x_at9/117+20134667..20140527transposon protein, putative, Mutator sub-class
LOC_Os07g33700OsAffx.22940.5.S1_x_at3/117+20134667..20140527transposon protein, putative, Mutator sub-class
LOC_Os07g33710Os.54722.1.S1_at10/117+20147693..20151093expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23201.1.S1_at--391--5231Chr07:20126195..20126219 (25 bp)
GAAGTACCAGAGCAAGGCCCGGTTT
LOC_Os07g33680
Os.23201.1.S1_at--1085--10851Chr07:20126634..20126658 (25 bp)
TTGGTAGCTCAAACTCATCCTTCAA
LOC_Os07g33680
Os.23201.1.S1_at--1095--5971Chr07:20126674..20126698 (25 bp)
GAGACAATCCTCAAGTTCTGGACAA
LOC_Os07g33680
Os.23201.1.S1_at--187--2711Chr07:20126697..20126721 (25 bp)
AAGCTAGGAGCTACACATCTTCACC
LOC_Os07g33680
Os.23201.1.S1_at--755--4811Chr07:20126729..20126753 (25 bp)
GCTCTGAGACCAAAGATGTTCCCAT
LOC_Os07g33680
Os.23201.1.S1_at--252--471Chr07:20126823..20126847 (25 bp)
ATCTCCCTTTGAAGAAGCCGCAGCT
LOC_Os07g33680
Os.23201.1.S1_at--554--5071Chr07:20126842..20126866 (25 bp)
GCAGCTGAGTGCTACGTTCTCAATC
LOC_Os07g33680
Os.23201.1.S1_at--112--9531Chr07:20126859..20126883 (25 bp)
TCTCAATCTCACACCGTATTTTTGG
LOC_Os07g33680
Os.23201.1.S1_at--872--9811Chr07:20126997..20127021 (25 bp)
TAACTTTGTTTCATGCTTGTGGACA
LOC_Os07g33680
Os.23201.1.S1_at--995--1691Chr07:20127041..20127065 (25 bp)
ACCATCCAACGCTCCGTGTAAAAAG
LOC_Os07g33680
Os.23201.1.S1_at--420--10751Chr07:20127075..20127099 (25 bp)
TTGAATGCTCTCTTTTCCCTATGAA
LOC_Os07g33680
Target Sequence 
GAAGTACCAGAGCAAGGCCCGGTTTGCACCCCTCAGTGATGCTCCATTTGCTCTCCGCGGTGCCCTTGGTAGCTCAAACT
CATCCTTCAACAACATAGATCATCTGAGACAATCCTCAAGTTCTGGACAAGCTAGGAGCTACACATCTTCACCCCTAGGA
GCTCTGAGACCAAAGATGTTCCCATCTGGAAACCGACTCCTGCACACAAGTCGTCCCCTGTCGGCTCCTGTTGCAAACCG
CCCACTGTCACCCCATCTCCCTTTGAAGAAGCCGCAGCTGAGTGCTACGTTCTCAATCTCACACCGTATTTTTGGTGCTG
CCCTGNGAGCTGTCATTATATCCATTCCTCTTGCCACCAAATTCAGCCTCATGTTTGATGTCTGAGAGCGAAATGTAGCT
TTCATTAGCTGGGTTTCCTTGCAAAGAATAACTTTGTTTCATGCTTGTGGACATATATGAGTAATAAGCCAAACCATCCA
ACGCTCCGTGTAAAAAGATTTCAATTTTGAATGCTCTCTTTTCCCTATGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23201.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis