Browse Element(s) Details


Os.14065.2.S1_x_at

Description gb:NM_187427.1
DB_XREF= gi:34901939
GEN=OJ1793_E11.7
TID=Os.14065.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.14065 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein~predicted by GeneMark.hmm etc. (OJ1793_E11.17), mRNA
DEF=Oryza sativa (japonica cultivar-group) 5-alpha-taxadienol-10-beta-hydroxylase-like protein (OJ1793_E11.7), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3356011/11Cytochrome P450 family protein, expressed
LOC_Os07g335801/11Cytochrome P450 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g33500OsAffx.20329.1.S1_at7/117+20021322..20025734retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g33510OsAffx.28575.1.S1_at1/117+20026085..20027311hypothetical protein
LOC_Os07g33520NANA7+20030321..20030713hypothetical protein
LOC_Os07g33530Os.14919.1.S1_at7/117+20034888..20036455hypothetical protein
LOC_Os07g33530Os.56216.1.S1_at1/117+20034888..20036455hypothetical protein
LOC_Os07g33540NANA7+20040277..20042078Cytochrome P450 family protein
LOC_Os07g33550Os.32947.2.S1_at1/117+20044189..20046008Cytochrome P450 family protein
LOC_Os07g33560Os.14065.1.S1_at11/117+20048553..20052351Cytochrome P450 family protein, expressed
LOC_Os07g33560Os.14065.2.S1_x_at11/117+20048553..20052351Cytochrome P450 family protein, expressed
LOC_Os07g33570NANA7+20054923..20057884retrotransposon protein, putative, unclassified
LOC_Os07g33580Os.43963.1.S1_at11/117+20061700..20063661Cytochrome P450 family protein, expressed
LOC_Os07g33580Os.43963.1.S1_x_at11/117+20061700..20063661Cytochrome P450 family protein, expressed
LOC_Os07g33580Os.14065.2.S1_x_at1/117+20061700..20063661Cytochrome P450 family protein, expressed
LOC_Os07g33600OsAffx.1378.1.S1_at9/117+20065859..20066988hypothetical protein
LOC_Os07g33600OsAffx.1378.1.S1_x_at9/117+20065859..20066988hypothetical protein
LOC_Os07g33600Os.20627.3.S1_x_at2/117+20065859..20066988hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009826biological_processunidimensional cell growth
GO:0016132biological_processbrassinosteroid biosynthesis
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14065.2.S1_x_at--1162--2391Chr07:20051325..20051349 (25 bp)
AAACATCGTCTGTTCTTATCACCTT
LOC_Os07g33560
Os.14065.2.S1_x_at--337--7791Chr07:20051358..20051382 (25 bp)
GGTGCCTAGCCAATGAGCCAGACAT
LOC_Os07g33560
Os.14065.2.S1_x_at--871--5831Chr07:20051529..20051553 (25 bp)
GACCTAATGAGCCTTTAACCTGGGA
LOC_Os07g33560
Os.14065.2.S1_x_at--816--9851Chr07:20051601..20051625 (25 bp)
TACGGACAATTTCTCCAATTTTTGG
LOC_Os07g33560
Os.14065.2.S1_x_at--630--1131Chr07:20051829..20051852 (24 bp)
AGTCTTCCATGCTCAAAGTATCACA
LOC_Os07g33560
Os.14065.2.S1_x_at--1001--6771Chr07:20051845..20051869 (25 bp)
GTATCACACATTTGGACGGGAAGTT
LOC_Os07g33560
Os.14065.2.S1_x_at--1155--5331Chr07:20051864..20051888 (25 bp)
GAAGTTTTTCAACGATCCGATCAAG
LOC_Os07g33560
Os.14065.2.S1_x_at--49--10271Chr07:20051904..20051928 (25 bp)
TTTGACAACCAGTCTTTGATCCCAC
LOC_Os07g33560
Os.14065.2.S1_x_at--403--10773Chr07:20051919..20051943 (25 bp)
TTGATCCCACCTTATTGCTTTGTGC
LOC_Os07g33560
Os.14065.2.S1_x_at--902--4231Chr07:20051985..20052009 (25 bp)
CCGAGGACTGAGACATTGGTAGCCA
LOC_Os07g33560
Os.14065.2.S1_x_at--728--9871Chr07:20052063..20052087 (25 bp)
TACAGGAAAGATCCTCTTCCGACGC
LOC_Os07g33560
Target Sequence 
AAACATCGTCTGTTCTTATCACCTTCTTGATCCGGTGCCTAGCCAATGAGCCAGACATCTTTGGCAAGATAACTGATGAA
CAAGAGGAGATTGCTAGGAGCAAAGGACCTAATGAGCCTTTAACCTGGGATGATGTCTCAAGGATGAAGTACACATGGAA
GGTGGCATTGGAGATACTACGGACAATTTCTCCAATTTTTGGAAGCTTCCGAACAGCTATCAAAGACATTGAATACCGGG
GCTATCACATTCCAAAAGGCTGGCAAGTCTTCCATGCTCAAAGTATCACACATTTGGACGGGAAGTTTTTCAACGATCCG
ATCAAGTTTGATCCTACTAGGTTTGACAACCAGTCTTTGATCCCACCTTATTGCTTTGTGCCATTTGGGGGAGGTCCAAG
TATGTGCCCTGGAAACGAGTTTCCGAGGACTGAGACATTGGTAGCCATGCACTACCTAGTGAGACAGTTCAGGTGGAAAT
TGTGCTGCAAAGAAGAAGGTTACAGGAAAGATCCTCTTCCGACGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14065.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis