Browse Element(s) Details


OsAffx.1381.2.A1_at

Description tigr:9635.m03289
TID=OsAffx.1381.2
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g334106/11ATPase, AAA family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g33370OsAffx.22295.2.S1_at11/117+19942549..19949361IQ calmodulin-binding motif family protein, expressed
LOC_Os07g33370OsAffx.22295.2.S1_x_at11/117+19942549..19949361IQ calmodulin-binding motif family protein, expressed
LOC_Os07g33370OsAffx.22295.1.S1_at7/117+19942549..19949361IQ calmodulin-binding motif family protein, expressed
LOC_Os07g33380OsAffx.28728.1.S1_at11/117+19955539..19956483hypothetical protein
LOC_Os07g33390Os.47752.1.S1_at9/117+19960426..19962128ATPase, AAA family protein, expressed
LOC_Os07g33390OsAffx.20433.1.S1_x_at2/117+19960426..19962128ATPase, AAA family protein, expressed
LOC_Os07g33400Os.23959.1.A1_x_at10/117+19963975..19968222hypothetical protein
LOC_Os07g33400Os.23959.1.A1_at5/117+19963975..19968222hypothetical protein
LOC_Os07g33400Os.55693.1.S1_at1/117+19963975..19968222hypothetical protein
LOC_Os07g33410OsAffx.1381.2.A1_at6/117+19968831..19972476ATPase, AAA family protein
LOC_Os07g33410OsAffx.20433.1.S1_x_at1/117+19968831..19972476ATPase, AAA family protein
LOC_Os07g33420Os.32947.2.S1_at11/117+19975950..19977736Cytochrome P450 family protein
LOC_Os07g33430NANA7+19978918..19979710hypothetical protein
LOC_Os07g33440Os.26830.1.S1_at11/117+19984018..19985974Cytochrome P450 family protein, expressed
LOC_Os07g33440Os.20627.3.S1_x_at2/117+19984018..19985974Cytochrome P450 family protein, expressed
LOC_Os07g33450NANA7+19987442..19994662retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0005524molecular_functionATP binding
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.1381.2.A1_at--88--5671Chr07:19972074..19972098 (25 bp)
GACATGGTGGCCTCGATTGGCTAGC
LOC_Os07g33410
OsAffx.1381.2.A1_at--892--7511Chr07:19972342..19972366 (25 bp)
GTGGAGGAGGCGACCCTAGTGCAAG
LOC_Os07g33410
OsAffx.1381.2.A1_at--795--5811Chr07:19972353..19972377 (25 bp)
GACCCTAGTGCAAGGAGGAGATGCT
LOC_Os07g33410
OsAffx.1381.2.A1_at--901--4711Chr07:19972375..19972399 (25 bp)
GCTGGTGGGTGTGGCATAGTCTTCG
LOC_Os07g33410
OsAffx.1381.2.A1_at--1152--7471Chr07:19972383..19972407 (25 bp)
GTGTGGCATAGTCTTCGGTGCACGA
LOC_Os07g33410
OsAffx.1381.2.A1_at--1137--7231Chr07:19972439..19972463 (25 bp)
GTCCCACATGTAGTCAGAGGTTGAA
LOC_Os07g33410
OsAffx.1381.2.A1_at--745--3111Chr07:19972465..19972489 (25 bp)
AATTTGGGATGATTGTGTTGTTCAA
NONE
OsAffx.1381.2.A1_at--532--7671Chr07:19972498..19972522 (25 bp)
GGGATATGTATCCATGATTTGTAGC
NONE
OsAffx.1381.2.A1_at--289--8771Chr07:19972504..19972528 (25 bp)
TGTATCCATGATTTGTAGCTCCATC
NONE
OsAffx.1381.2.A1_at--309--6531Chr07:19972513..19972537 (25 bp)
GATTTGTAGCTCCATCATGCAGAGT
NONE
OsAffx.1381.2.A1_at--184--10811Chr07:19972516..19972540 (25 bp)
TTGTAGCTCCATCATGCAGAGTTTG
NONE
Target Sequence 
GACATGGTGGCCTCGATTGGCTAGCCGAGGGCGTGGTAGACGGCTGCATCTGGCCGGTGCGGGAGAGTACGGAGGAGGGG
TCGGAGACCGGCTTAGCGCAGAGAGGCGCAGCCAATGGCAGCGGAGGCCGGCTCGGCGCGAGAGGCACGGGCGGCGGAGA
TGGAGGCTGGCTTGGCGTGAGAGGCGCGGCAGATGGAGGGAGGCCGGATTGGCGCGAGAGGCGCGTTCGGTGGAGGAGGC
TGGTTTGGCACGAGAGGCGCGGCTGGCGGTGGAGGAGGCGACCCTAGTGCAAGGAGGAGATGCTGGTGGGTGTGGCATAG
TCTTCGGTGCACGAAGGCTGGCCGGCGGGGGGCGCCGGTGCAGGGGTCCCACATGTAGTCAGAGGTTGAATAATTTGGGA
TGATTGTGTTGTTCAAAAAACAAGGGGATATGTATCCATGATTTGTAGCTCCATCATGCAGAGTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.1381.2.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis