Browse Element(s) Details


OsAffx.22295.2.S1_x_at

Description tigr:9635.m03285
TID=OsAffx.22295.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3337011/11IQ calmodulin-binding motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g33330Os.16984.2.S1_a_at11/117+19918642..19922640RNA Binding Protein 45, putative, expressed
LOC_Os07g33340Os.24708.1.S1_at11/117+19924412..19930300DEAD/DEAH box helicase family protein, expressed
LOC_Os07g33350Os.49631.2.S1_x_at11/117+19933799..19934729Hsp20/alpha crystallin family protein, expressed
LOC_Os07g33360Os.24533.1.S1_x_at11/117+19936793..19941475chromosoma associate protein subunit H2, putative, expressed
LOC_Os07g33360Os.24533.1.S1_at11/117+19936793..19941475chromosoma associate protein subunit H2, putative, expressed
LOC_Os07g33360Os.46297.1.S1_at11/117+19936793..19941475chromosoma associate protein subunit H2, putative, expressed
LOC_Os07g33370OsAffx.22295.2.S1_at11/117+19942549..19949361IQ calmodulin-binding motif family protein, expressed
LOC_Os07g33370OsAffx.22295.2.S1_x_at11/117+19942549..19949361IQ calmodulin-binding motif family protein, expressed
LOC_Os07g33370OsAffx.22295.1.S1_at7/117+19942549..19949361IQ calmodulin-binding motif family protein, expressed
LOC_Os07g33380OsAffx.28728.1.S1_at11/117+19955539..19956483hypothetical protein
LOC_Os07g33390Os.47752.1.S1_at9/117+19960426..19962128ATPase, AAA family protein, expressed
LOC_Os07g33390OsAffx.20433.1.S1_x_at2/117+19960426..19962128ATPase, AAA family protein, expressed
LOC_Os07g33400Os.23959.1.A1_x_at10/117+19963975..19968222hypothetical protein
LOC_Os07g33400Os.23959.1.A1_at5/117+19963975..19968222hypothetical protein
LOC_Os07g33400Os.55693.1.S1_at1/117+19963975..19968222hypothetical protein
LOC_Os07g33410OsAffx.1381.2.A1_at6/117+19968831..19972476ATPase, AAA family protein
LOC_Os07g33410OsAffx.20433.1.S1_x_at1/117+19968831..19972476ATPase, AAA family protein

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Gene Ontology Classification
GO idTypeName
GO:0005516molecular_functioncalmodulin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22295.2.S1_x_at--1066--671Chr07:19943445..19943469 (25 bp)
ATGACATCATGTGTCTGATCAACAG
LOC_Os07g33370
OsAffx.22295.2.S1_x_at--1056--2471Chr07:19943425..19943449 (25 bp)
AACAGACTGATTGCTGCAGTATCAC
LOC_Os07g33370
OsAffx.22295.2.S1_x_at--858--6891Chr07:19943407..19943431 (25 bp)
GTATCACAGCGGAGCATCAGCACTA
LOC_Os07g33370
OsAffx.22295.2.S1_x_at--357--5931Chr07:19943396..19943420 (25 bp)
GAGCATCAGCACTATTCGACAGATT
LOC_Os07g33370
OsAffx.22295.2.S1_x_at--850--10251Chr07:19943205..19943397 (25 bp)
TTTGTGCAACATTAAGTACGGCTAC
LOC_Os07g33370
OsAffx.22295.2.S1_x_at--139--3031Chr07:19943146..19943170 (25 bp)
AATGCTGGTGCTGTCGAAATTCTGC
LOC_Os07g33370
OsAffx.22295.2.S1_x_at--1144--4591Chr07:19943105..19943129 (25 bp)
GCTGAACCGTGGAGTTCCAGACCAA
LOC_Os07g33370
OsAffx.22295.2.S1_x_at--270--2511Chr07:19943047..19943071 (25 bp)
AACATCGCACGATTCAGGAACCTTC
LOC_Os07g33370
OsAffx.22295.2.S1_x_at--799--8171Chr07:19943031..19943055 (25 bp)
GGAACCTTCAACCAGTGCTAGCTAA
LOC_Os07g33370
OsAffx.22295.2.S1_x_at--922--4851Chr07:19943015..19943039 (25 bp)
GCTAGCTAACACTCCACAGGCAGTT
LOC_Os07g33370
OsAffx.22295.2.S1_x_at--181--10571Chr07:19942668..19942692 (25 bp)
TTCTTCGTCGCGTGTGATATCTTGA
LOC_Os07g33370
Target Sequence 
ATGACATCATGTGTCTGATCAACAGACTGATTGCTGCAGTATCACAGCGGAGCATCAGCACTATTCGACAGATTTGTGCA
ACATTAAGTACGGCTACAGAGCATTCGGAGAAGTGCTGTCAGACAATTGTCAATGCTGGTGCTGTCGAAATTCTGCTGAA
GCAAATCAATTTGCTGAACCGTGGAGTTCCAGACCAAGAAGTCCTGAAACAAGTGCTCTTCACTTTGAGAAACATCGCAC
GATTCAGGAACCTTCAACCAGTGCTAGCTAACACTCCACAGGCAGTTGAAATTGTTTTCCAGGAGTTGCTGAGGAGCAAA
ACGGAAGGGTTCTTCGTCGCGTGTGATATCTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22295.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis